Man pages for vegsoup
Classes and Methods for Phytosociology
| abbr | Get Abbreviations used to Encode Species and Layer Replicates |
| abundant | Return Abundant Species According to a Threshold Value. |
| accuracy | Accuracy Statistics for Objects of class VegsoupPartition |
| apriori | Grouping Variable of 'Vegsoup*' Objects |
| as.data.frame | Coerce to data.frame |
| as.data.list | Coercion to '"data.lists"' |
| as.dendrogram | Dendrograms of Partitions |
| as.matrix | Retrieve Species Matrix with Specified Storage Mode |
| barmstein | Test Data Set |
| berchtesgaden | Grassland survey in National Park Berchtesgaden |
| bind | Combine 'Vegsoup*' objects |
| BraunBlanquetReduce | Reduce 9 Point Braun-Blanquet Abundance Scale to 7 Point |
| coerce | Coerce Methods for 'Vegsoup*' objects |
| coldiss | Plots of the Dissimilarity Matrix of an Object of class... |
| colSums | Row and Column Sums for Objects of Class VegsoupData* |
| combine | Combine taxa |
| compress | Compress Object and Retain Minimal Information |
| confusion | Confusionion Matrix for VegsoupPartition Objects |
| coverscale | Set or Retrieve an Abundance Scale for 'Vegsoup*' Objects |
| Coverscale-class | Coverscale Class |
| decostand | Standardization Methods |
| dim | Number or Rows, Columns, and Cells |
| elevation | Query Elevation |
| extract | Indexing to Extract Values of a Vegsoup* Object |
| fidelity | Calculate Fidelity Values |
| fill | Matrix fill of species matrix |
| googletiles | Geocoding Using Tile Map Service Protocol |
| head | Return the First or Last Part of the Species Matrix |
| hist | Plot Histogram of Fidelity Values |
| identical | Intersect plot names |
| Indpower | Indicator Power of Species |
| Indspc | Compositional Indicator Species Analysis |
| intersect | Intersect plot names |
| Isamic | Indicator Species Analysis to Minimize Intermediate Constancy |
| isolate | Manually Modifiy Partitions |
| KML | Write KML Files to Disk |
| Latex | Typesetting Tables in LaTeX |
| layer | Return Stratum/Layer |
| layers | Get or Modify Layers |
| map | Draw Map of Plot Locations |
| misc | Utility Functions |
| multipatt | Methods for Function Multipatt |
| murdoch | Indicator Species Analysis by Murdoch Preference Function |
| names | Row and Column Names of 'Vegsoup*' objects |
| nndist | Nearest Neighbor Distances |
| optimize | Optimize Partitioning |
| OptimStride | Compute a Series of Partitions/Clusterings |
| outlier | Outlier Detection |
| Partitioning | Partitioning Vector of VegsoupPartition objects |
| plot | Plotting methods |
| plotPCO | Plot Principal Coordinates |
| quantile | Sample Quantiles for a Community Matrix |
| raster | Extract values from Raster objects |
| read.XML | Read From TurboVeg XML Files |
| rectangles | Plot Matrix Dimensions |
| reshape | Reshape Species Matrix |
| reverseGeocode | Reverse geocoding |
| richness | Species Richness |
| sample | Random Samples and Permutations for 'Vegsoup*' Objects |
| seriation | Reorder as to Reflect a Vegetation Table |
| shared | Shared Species |
| SigFidelity | Experimental Function |
| sites | Methods for the Sites Slot of 'Vegsoup*' Objects |
| Sites-class | Sites Class |
| spatial | Spatial Methods for 'Vegsoup*' Objects |
| species | Methods to Retrieve or Manipulate Slot Species of 'Vegsoup*'... |
| Species-class | Species Class |
| SpeciesTaxonomy | Compare Species Abbreviations to Taxonomic Reference List |
| SpeciesTaxonomy-class | SpeciesTaxonomy Class |
| splitAbbr | Deparse Species Layer Replication of 'Vegsoup*' Objects |
| spread | Occurrences of Species in Partitions |
| stable | Classification Stability |
| stack | Stack Species Matrix, Sites Data or Spatial Coordinates |
| summary-methods | Summary of Object |
| tables | Constancy and Contingency Tables |
| taxalist | Species and Relevee Listings |
| taxon | Get or Subset Object by Scientific Taxon Name |
| Taxonomy-class | Class Taxonomy |
| templates | LaTex template files |
| typical | Typical Samples of an Object of Class Vegsoup* |
| validate | Partition Quality Assessment for '"VegsoupPartition"' Objects |
| vegdist | Dissimilarity Matrices from 'Vegsoup*' Objects |
| Vegsoup | Create an object of class Vegsoup |
| Vegsoup-class | Class Vegsoup |
| VegsoupOptimstride-class | VegsoupOptimstride Class |
| vegsoup-package | An overview of the functions in this package |
| VegsoupPartition | Partition a Vegsoup object |
| VegsoupPartition-class | VegsoupPartition Class |
| VegsoupPartitionFidelity-class | VegsoupPartitionFidelity Class |
| verbatim | Read or Write Fixed-Column-Width Community Tables From or To... |
| windsfeld | Alpine Vegetation |
