minCountFilt: minCountFilt methods

In AllelicImbalance: Investigates Allele Specific Expression

Description

filter on minCountFilt snps

Usage

minCountFilt(x, ...)

## S4 method for signature 'ASEset'
minCountFilt(
  x,
  strand = "*",
  threshold.counts = 1,
  sum = "all",
  replace.with = "zero",
  return.class = "ASEset"
)

Arguments

x	ASEset object
...	internal param
strand	strand to infer from
threshold.counts	cutoff for read counts (see details)
sum	'each' or 'all'
replace.with	only option 'zero'
return.class	'ASEset', 'array' or 'matrix'

Details

Description info here

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#load example data
data(ASEset)
a <- ASEset

minCountFilt(a)

AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.