minFreqFilt: minFreqFilt methods

In AllelicImbalance: Investigates Allele Specific Expression

Description

filter on minFreqFilt snps

Usage

minFreqFilt(x, ...)

## S4 method for signature 'ASEset'
minFreqFilt(
  x,
  strand = "*",
  threshold.frequency = 0.1,
  replace.with = "zero",
  return.class = "ASEset",
  sum = "all"
)

Arguments

x	ASEset object
...	internal param
strand	strand to infer from
threshold.frequency	least fraction to classify (see details)
replace.with	only option 'zero'
return.class	'ASEset', 'array' or 'matrix'
sum	'each' or 'all'

Details

Description info here

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#load example data
data(ASEset)
a <- ASEset

minFreqFilt(a)

AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.