API for ArrayTools
geneChip Analysis Package

Global functions
Output2HTML	Man page
Output2HTML,interactionResult-method	Man page
Output2HTML,regressResult-method	Man page
QC	Man page
Sort	Man page
Sort,interactionResult-method	Man page
Sort,regressResult-method	Man page
`createGSEAFiles`	Source code
`createIndex`	Source code
`createIngenuityFile`	Source code
`intensityPlot`	Source code
`output.cls`	Source code
`output.gct`	Source code
`plotCluster`	Source code
`preProcessGeneST`	Source code
`qaGeneST`	Source code
`selectSigGeneInt`	Source code
`selectSigGene`	Source code
adjustment	Man page
adjustment,interactionResult-method	Man page
adjustment,regressResult-method	Man page
class:contrastMatrix	Man page
class:designMatrix	Man page
class:interactionResult	Man page
class:regressResult	Man page
contrastMatrix	Man page
contrastMatrix-class	Man page
createExpressionSet	Man page Source code
createGSEAFiles	Man page
createIndex	Man page
createIngenuityFile	Man page
designMatrix	Man page
designMatrix-class	Man page
eSetExample	Man page
exprsExample	Man page
geneFilter	Man page
getAdjP	Man page
getAdjP,interactionResult-method	Man page
getAdjP,regressResult-method	Man page
getAnnotation	Man page
getAnnotation,interactionResult-method	Man page
getAnnotation,regressResult-method	Man page
getCompare1	Man page
getCompare1,contrastMatrix-method	Man page
getCompare2	Man page
getCompare2,contrastMatrix-method	Man page
getContrast	Man page
getContrast,contrastMatrix-method	Man page
getContrast,interactionResult-method	Man page
getContrast,regressResult-method	Man page
getCovariates	Man page
getCovariates,designMatrix-method	Man page
getDesign	Man page
getDesign,designMatrix-method	Man page
getF	Man page
getF,interactionResult-method	Man page
getF,regressResult-method	Man page
getFC	Man page
getFC,interactionResult-method	Man page
getFC,regressResult-method	Man page
getFCCutoff	Man page
getFCCutoff,interactionResult-method	Man page
getFCCutoff,regressResult-method	Man page
getFileName,interactionResult-method	Man page
getFileName,regressResult-method	Man page
getFilterMethod	Man page
getFilterMethod,interactionResult-method	Man page
getFilterMethod,regressResult-method	Man page
getID	Man page
getID,interactionResult-method	Man page
getID,regressResult-method	Man page
getIndex	Man page
getIndex,interactionResult-method	Man page
getIndex,regressResult-method	Man page
getIntIndex	Man page
getIntIndex,designMatrix-method	Man page
getInteraction	Man page
getInteraction,contrastMatrix-method	Man page
getLength	Man page
getLength,interactionResult-method	Man page
getLevel	Man page
getLevel,contrastMatrix-method	Man page
getNormalizationMethod	Man page
getNormalizationMethod,interactionResult-method	Man page
getNormalizationMethod,regressResult-method	Man page
getP	Man page
getP,interactionResult-method	Man page
getP,regressResult-method	Man page
getPCutoff	Man page
getPCutoff,interactionResult-method	Man page
getPCutoff,regressResult-method	Man page
getTarget	Man page
getTarget,designMatrix-method	Man page
hugene10stCONTROL	Man page
initialize,contrastMatrix-method	Man page
initialize,designMatrix-method	Man page
interactionResult	Man page
interactionResult-class	Man page
mogene10stCONTROL	Man page
output.cls	Man page
output.gct	Man page
output.ing	Man page
pDataExample	Man page
postInteraction	Man page
preProcess3prime	Man page
preProcessGeneST	Man page
qa3prime	Man page
qaGeneST	Man page
regress	Man page
regressResult	Man page
regressResult-class	Man page
regressionMethod	Man page
regressionMethod,interactionResult-method	Man page
regressionMethod,regressResult-method	Man page
selectSigGene	Man page
selectSigGene,interactionResult-method	Man page
selectSigGene,regressResult-method	Man page
selectSigGeneInt	Man page
show,contrastMatrix-method	Man page
show,designMatrix-method	Man page
show,interactionResult-method	Man page
show,regressResult-method	Man page
summary,interactionResult-method	Man page
summary,regressResult-method	Man page