Man pages for BaalChIP
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
| adjustmentBaalPlot | Method adjustmentBaalPlot |
| alleleCounts | Method alleleCounts |
| BaalChIP | BaalChIP-class |
| BaalChIP.get | Method BaalChIP.get |
| BaalChIP.report | Method BaalChIP.report |
| BaalChIP.run | Method BaalChIP.run |
| BaalObject | BaalObject example dataset |
| blacklist_hg19 | Blacklisted genomic regions |
| ENCODEexample | ENCODEexample example dataset |
| FAIREexample | FAIREexample example dataset |
| filter1allele | Method filter1allele |
| filterIntbias | Method filterIntbias |
| getASB | Method getASB |
| mergePerGroup | Method mergePerGroup |
| pickrell2011cov1_hg19 | Genomic regions of collapsed repeats |
| plotQC | Method plotQC |
| plotSimul | Method plotSimul |
| QCfilter | Method QCfilter |
| summaryASB | Method summaryASB |
| summaryQC | Method summaryQC |
| UniqueMappability50bp_hg19 | Genomic regions of unique mappability |
