Genomic regions of collapsed repeats

Description

A GRanges object containing collapsed repeat regions at the 0.1% threshold (hg19 reference). Used as 'RegionsToFilter' within the QCfilter function so that variants overlapping these regions will be removed.

Format

A GRanges object of 34359 ranges.

Author(s)

Ines de Santiago ines.desantiago@cruk.cam.ac.uk

Source

File available as supplementary data: Pickrell2011_seq.cov1.bed (http://www.ncbi.nlm.nih.gov/pubmed/21690102)

References

Pickrell et al., 2011 (http://www.ncbi.nlm.nih.gov/pubmed/21690102)