plotQC: Method plotQC

In BaalChIP: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

Description

Method plotQC

Produces different plots of QC results.

Usage

plotQC(.Object, what = "barplot_per_group", addlegend = TRUE, plot = TRUE)

## S4 method for signature 'BaalChIP'
plotQC(.Object, what = "barplot_per_group",
  addlegend = TRUE, plot = TRUE)

Arguments

.Object	An object of the BaalChIP class.
what	A single character value indicating the type of plot. Options: overall_pie: plots the average percentage of variants in each filter category (averaged across all groups analysed). boxplot_per_filter: plots the number of variants that were filtered out per filter category. barplot_per_group: plots the number of variants that were filtered out per group.
addlegend	A logical value indicating if legend should be included in the plot (default TRUE).
plot	a logical value to whether it should plot (TRUE) or not (FALSE). Default is TRUE.

Value

A plot

Author(s)

Ines de Santiago

See Also

BaalChIP.run, summaryQC

Examples

data('BaalObject')
plotQC(BaalObject, what = 'overall_pie')
plotQC(BaalObject, what =  'boxplot_per_filter', addlegend=FALSE)
plotQC(BaalObject, what =  'barplot_per_group')

BaalChIP documentation built on Nov. 8, 2020, 5:23 p.m.