Method summaryQC

Share:

Description

Method summaryQC

Generates summary of QC result.

Usage

1
2
3
4
summaryQC(.Object)

## S4 method for signature 'BaalChIP'
summaryQC(.Object)

Arguments

.Object

An object of the BaalChIP class.

Value

A list with two elements:

  • filtering_stats containing the number of variants that were filtered out in each filter category and the total number that 'pass' all filters.

  • average_stats containing the average number and average percentage of variants in each filter category, averaged across all analysed groups.

Author(s)

Ines de Santiago

See Also

BaalChIP.run, plotQC

Examples

1
2
data('BaalObject')
summaryQC(BaalObject)