Files in BiSeq
Processing and analyzing bisulfite sequencing data
.BBSoptions
NAMESPACE
DESCRIPTION
build/vignette.rds
data/predictedMeth.RData
data/betaResultsNull.RData
data/DMRs.RData
data/promoters.RData
data/vario.RData
data/betaResults.RData
data/datalist
data/rrbs.RData
R/readBismark.R
R/annotateGRanges.R
R/predictMeth.R
R/clusterSitesToGR.R
R/plotMethMap.R
R/logisticRegression.R
R/limitCov.R
R/plotSmoothMeth.R
R/writeBED.R
R/AllGenerics.R
R/plotMeth.R
R/plotBindingSites.R
R/globalTest.R
R/filterByCov.R
R/findDMRs.R
R/testClusters.R
R/methods-BSraw.R
R/methods-BSrel.R
R/trimClusters.R
R/covStatistics.R
R/estLocCor.R
R/summarizeRegions.R
R/smoothVariogram.R
R/betaRegression.R
R/makeVariogram.R
R/rawToRel.R
R/clusterSites.R
R/binomLikelihoodSmooth.R
R/filterBySharedRegions.R
R/AllClasses.R
R/compareTwoSamples.R
R/categorialColors.R
R/covBoxplots.R
R/variogram.R
vignettes/BiSeq.bib
vignettes/igv_snapshot.png
vignettes/BiSeq.Rnw
vignettes/unsrturl.bst
vignettes/igv_snapshot_smoothed.png
man/BSrel-class.Rd
man/predictedMeth.Rd
man/estLocCor.Rd
man/plotMethMap.Rd
man/annotateGRanges.Rd
man/logisticRegression.Rd
man/globalTest.Rd
man/writeBED.Rd
man/betaResultsNull.Rd
man/plotMeth.Rd
man/findDMRs.Rd
man/readBismark.Rd
man/plotBindingSites.Rd
man/rawToRel.Rd
man/binomLikelihoodSmooth.Rd
man/covStatistics.Rd
man/covBoxplots.Rd
man/DMRs.Rd
man/rrbs.Rd
man/makeVariogram.Rd
man/filterByCov.Rd
man/plotSmoothMeth.Rd
man/betaRegression.Rd
man/predictMeth.Rd
man/clusterSites.Rd
man/testClusters.Rd
man/trimClusters.Rd
man/clusterSitesToGR.Rd
man/betaResults.Rd
man/promoters.Rd
man/vario.Rd
man/smoothVariogram.Rd
man/BSraw-class.Rd
man/filterBySharedRegions.Rd
man/compareTwoSamples.Rd
man/limitCov.Rd
man/summarizeRegions.Rd
inst/doc/BiSeq.Rnw
inst/doc/BiSeq.R
inst/doc/BiSeq.pdf
inst/extdata/CpG_context_test_sample.cov
