quickGenes: Identify and quantify genes.
In CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Description
Usage
Arguments
Value
See Also
Examples
Description
A convienient wrapper around assignGeneID, and quantifyGenes. Also removes
unstranded features
Usage
1
quickGenes(object, geneModels = NULL, ...)
Arguments
object
RangedSummarizedExperiment: Location and counts of clusters,
usually found by calling quantifyClusters.
geneModels
TxDb or GRanges: Gene models via a TxDb, or manually
specified as a GRangesList.
...
additional arguments passed to assignGeneID.
Value
RangedSummarizedExperiment containing gene expression and clusters
assigned within each gene.
See Also
Other Wrapper functions:
quickEnhancers(),
quickTSSs()
Examples
1
# See the CAGEfightR vignette for an overview!
CAGEfightR documentation built on Nov. 8, 2020, 5:42 p.m.
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Description Usage Arguments Value See Also Examples
Description
A convienient wrapper around assignGeneID, and quantifyGenes. Also removes unstranded features
Usage
1 | quickGenes(object, geneModels = NULL, ...)
|
Arguments
object |
RangedSummarizedExperiment: Location and counts of clusters, usually found by calling quantifyClusters. |
geneModels |
TxDb or GRanges: Gene models via a TxDb, or manually specified as a GRangesList. |
... |
additional arguments passed to assignGeneID. |
Value
RangedSummarizedExperiment containing gene expression and clusters assigned within each gene.
See Also
Other Wrapper functions:
quickEnhancers(),
quickTSSs()
Examples
1 | # See the CAGEfightR vignette for an overview!
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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