quickTSSs: Identify and quantify Transcription Start Sites (TSSs).
In CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Description
Usage
Arguments
Value
See Also
Examples
Description
A convienient wrapper around calcTPM, calcPooled, tuneTagClustering,
clusterUnidirectionally and quantifyClusters.
Usage
1
quickTSSs(object)
Arguments
object
RangedSummarizedExperiment: Location and counts of CTSSs,
usually found by calling quantifyCTSSs.
Value
RangedSummarizedExperiment containing location and counts of TSSs
See Also
Other Wrapper functions:
quickEnhancers(),
quickGenes()
Examples
1
# See the CAGEfightR vignette for an overview!
CAGEfightR documentation built on Nov. 8, 2020, 5:42 p.m.
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Description Usage Arguments Value See Also Examples
Description
A convienient wrapper around calcTPM, calcPooled, tuneTagClustering, clusterUnidirectionally and quantifyClusters.
Usage
1 | quickTSSs(object)
|
Arguments
object |
RangedSummarizedExperiment: Location and counts of CTSSs, usually found by calling quantifyCTSSs. |
Value
RangedSummarizedExperiment containing location and counts of TSSs
See Also
Other Wrapper functions:
quickEnhancers(),
quickGenes()
Examples
1 | # See the CAGEfightR vignette for an overview!
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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