shapeIQR: Shape statitic: Interquartile range

In CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Description

Calculates the interquartile range of a vector.

Usage

shapeIQR(x, lower = 0.25, upper = 0.75)

Arguments

x	numeric Rle vector: Coverage series.
lower	numeric: Lower quartile.
upper	numeric: Upper quartile.

Value

Numeric

See Also

Other Shape functions: calcShape(), shapeEntropy(), shapeMean()

Examples

# Hypothetical shard/broad clusters:
x_sharp <- Rle(c(1,1,1,4,5,2,1,1))
x_broad <- Rle(c(1,2,3,5,4,3,2,1))

# Calculate IQR
shapeIQR(x_sharp)
shapeIQR(x_broad)

# See calcShape for more usage examples

CAGEfightR documentation built on Nov. 8, 2020, 5:42 p.m.