parameter: Calibration Model parameter: ParameterList Example

In CALIB: Calibration model for estimating absolute expression levels from microarray data

Description

This ParameterList object represents calibration

model parameters of two arrays. It was estimated from the dataset spike

by the function estimateParameter in the CALIB package.

Usage

data(parameter)

Format

parameter is a ParameterList object containing the following list components:\$MuS,\$Ka,
\$P1,\$P2,\$SigmaA,\$SigmaM,\$SigmaS,\$SpotError,\$Method with two subfields \$Method\$BC and \$Method\$Area, \$ErrorModel and \$genes. Among these parameters,P1,P2 and SigamA are different for different dyes.

References

dataset spike.

Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22: 1251-1258.

Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.

Examples

data(parameter)

CALIB documentation built on Oct. 31, 2019, 3:45 a.m.