spike: Experiment Data: SpikeList Example

In CALIB: Calibration model for estimating absolute expression levels from microarray data

Description

This SpikeList object contains all the spikes in dataset

RG.It is generated by the function
read.spike from RG and user-specified concentraion file in the CALIB package.

Usage

data(spike)

Format

spike is an SpikeList object containing the following list components: \$R,\$G,\$Rb,\$Gb,
\$RArea,\$GArea,\$RConc,\$GConc and \$genes. It represents two microarrays and 600 spikes, including 480 calibration controls, 96 ratio controls and 24 negative controls.

Source

For the source information, see the introduction of dataset RG.

References

dataset RG.

Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22: 1251-1258.

Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.

Examples

data(spike)

plotSpikeRG(spike,array=1)

CALIB documentation built on Oct. 31, 2019, 3:45 a.m.