API for CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.

Global functions
.convertChromosomeToArm	Source code
.featureDataRequiredColumns	Source code
.getCentromere	Source code
.getChromosomeLengths	Source code
.makeEmptyFeatureData	Source code
.makeEmptyFeatureDataForRegions	Source code
.makeSegments	Source code
.setFeatureData	Source code
CGHbase	Man page
CGHbase-package	Man page
Wilting	Man page
WiltingCalled	Man page
WiltingNorm	Man page
WiltingRaw	Man page
WiltingRegions	Man page
WiltingSeg	Man page
avedist	Man page
avedist,cghRegions-method	Man page
bpend	Man page
bpend,cghCall-method	Man page
bpend,cghRaw-method	Man page
bpend,cghRegions-method	Man page
bpend,cghSeg-method	Man page
bpstart	Man page
bpstart,cghCall-method	Man page
bpstart,cghRaw-method	Man page
bpstart,cghRegions-method	Man page
bpstart,cghSeg-method	Man page
calls	Man page
calls,cghCall-method	Man page
calls<-	Man page
calls<-,cghCall,matrix-method	Man page
cghCall	Man page
cghCall-class	Man page
cghRaw	Man page
cghRaw-class	Man page
cghRegions	Man page
cghRegions-class	Man page
cghSeg	Man page
cghSeg-class	Man page
chromosomes	Man page
chromosomes,cghCall-method	Man page
chromosomes,cghRaw-method	Man page
chromosomes,cghRegions-method	Man page
chromosomes,cghSeg-method	Man page
class:cghCall	Man page
class:cghRaw	Man page
class:cghRegions	Man page
class:cghSeg	Man page
copynumber	Man page
copynumber,cghCall-method	Man page
copynumber,cghRaw-method	Man page
copynumber,cghSeg-method	Man page
copynumber<-	Man page
copynumber<-,cghCall,matrix-method	Man page
copynumber<-,cghRaw,matrix-method	Man page
copynumber<-,cghSeg,matrix-method	Man page
frequencyPlot	Man page
frequencyPlot,cghRegions,missing-method	Man page
frequencyPlotCalls	Man page Source code
frequencyPlotCalls,cghCall,missing-method	Man page
initialize,cghCall-method	Man page
initialize,cghRaw-method	Man page
initialize,cghRegions-method	Man page
initialize,cghSeg-method	Man page
make_cghRaw	Man page Source code
nclone	Man page
nclone,cghRegions-method	Man page
plot,cghCall,missing-method	Man page
plot,cghRaw,missing-method	Man page
plot,cghSeg,missing-method	Man page
plot.cghCall	Man page
plot.cghRaw	Man page
plot.cghRegions	Man page
plot.cghRegions,cghRegions,missing-method	Man page
plot.cghSeg	Man page
plot.summary,cghCall,missing-method	Man page
probamp	Man page
probamp,cghCall-method	Man page
probamp<-	Man page
probamp<-,cghCall,matrix-method	Man page
probdloss	Man page
probdloss,cghCall-method	Man page
probdloss<-	Man page
probdloss<-,cghCall,matrix-method	Man page
probgain	Man page
probgain,cghCall-method	Man page
probgain<-	Man page
probgain<-,cghCall,matrix-method	Man page
probloss	Man page
probloss,cghCall-method	Man page
probloss<-	Man page
probloss<-,cghCall,matrix-method	Man page
probnorm	Man page
probnorm,cghCall-method	Man page
probnorm<-	Man page
probnorm<-,cghCall,matrix-method	Man page
regions	Man page
regions,cghRegions-method	Man page
regions<-	Man page
regions<-,cghRegions,matrix-method	Man page
segmented	Man page
segmented,cghCall-method	Man page
segmented,cghSeg-method	Man page
segmented<-	Man page
segmented<-,cghCall,matrix-method	Man page
segmented<-,cghSeg,matrix-method	Man page
summaryPlot	Man page