API for CNPBayes
Bayesian mixture models for copy number polymorphisms

Global functions
BatchModel-class Man page
BatchModelExample Man page
CNPBayes Man page
CNPBayes-package Man page
CopyNumberModel Man page
CopyNumberModel,MultiBatchModel-method Man page
CopyNumberModel,MultiBatchPooled-method Man page
CopyNumberModel,SingleBatchModel-method Man page
DensityBatchModel-class Man page
DensityModel-class Man page
Hyperparameters Man page
Hyperparameters-class Man page
HyperparametersBatch-class Man page
HyperparametersMarginal-class Man page
HyperparametersMultiBatch Man page
HyperparametersMultiBatch-class Man page
HyperparametersSingleBatch Man page
HyperparametersSingleBatch-class Man page
HyperparametersTrios Man page
HyperparametersTrios-class Man page
MB Man page
MBP Man page
MarginalModel-class Man page
MarginalModelExample Man page
McmcChains-class Man page
McmcParams Man page
McmcParams-class Man page
MixtureModel-class Man page
MultiBatch-class Man page
MultiBatchCopyNumber Man page
MultiBatchCopyNumber-class Man page
MultiBatchCopyNumberPooled Man page
MultiBatchCopyNumberPooled-class Man page
MultiBatchModel-class Man page
MultiBatchModel2 Man page
MultiBatchModelExample Man page
MultiBatchPooledExample Man page
SB Man page
SBP Man page
SingleBatchCopyNumber Man page
SingleBatchCopyNumber-class Man page
SingleBatchModel-class Man page
SingleBatchModel2 Man page
SingleBatchModelExample Man page
SingleBatchPooled Man page
TrioBatchModel Man page
[,McmcChains,ANY,ANY,ANY-method Man page
[,McmcChains,ANY-method Man page
[,McmcChains-method Man page
[,McmcChainsTrios,ANY,ANY,ANY-method Man page
[,McmcChainsTrios,ANY-method Man page
[,McmcChainsTrios-method Man page
[,MultiBatchModel,ANY,ANY,ANY-method Man page
[,MultiBatchModel,ANY,ANY-method Man page
[,MultiBatchModel,ANY-method Man page
[,MultiBatchModel-method Man page
bafLikelihood Man page
batch Man page
batch,MixtureModel-method Man page
bayesFactor Man page
bic Man page
bic,MultiBatchModel-method Man page
burnin Man page
burnin,McmcParams-method Man page
burnin,MixtureModel-method Man page
burnin<- Man page
burnin<-,McmcParams,ANY-method Man page
burnin<-,McmcParams-method Man page
burnin<-,MixtureModel,ANY-method Man page
burnin<-,MixtureModel-method Man page
chains Man page
chains,MixtureModel-method Man page
chromosome Man page
chromosome,GenomicRanges-method Man page
collapseBatch Man page
collapseBatch,MultiBatchModel-method Man page
collapseBatch,SummarizedExperiment-method Man page
collapseBatch,numeric-method Man page
consensusCNP Man page
copyNumber Man page
copyNumber,MultiBatchCopyNumber-method Man page
copyNumber,MultiBatchCopyNumberPooled-method Man page
dfr Man page
dfr,Hyperparameters-method Man page
dfr,MixtureModel,numeric-method Man page
dfr,MixtureModel-method Man page
dfr<- Man page
dfr<-,Hyperparameters,numeric-method Man page
dfr<-,MixtureModel,numeric-method Man page
downSample Man page
eta.0 Man page
eta.0,Hyperparameters-method Man page
eta.0,MixtureModel-method Man page
extract Man page
findSurrogates,MultiBatch-method Man page
ggChains Man page
ggChains,MultiBatchModel-method Man page
ggChains,MultiBatchPooled-method Man page
ggMixture Man page
ggMixture,MultiBatch-method Man page
ggMixture,MultiBatchCopyNumber-method Man page
ggMixture,MultiBatchCopyNumberPooled-method Man page
ggMixture,MultiBatchModel-method Man page
ggMixture,MultiBatchPooled-method Man page
gibbs Man page
hpList Man page
hyperParams Man page
hyperParams,MixtureModel-method Man page
hyperParams<- Man page
hyperParams<-,MixtureModel,Hyperparameters-method Man page
hyperParams<-,MixtureModel-method Man page
iter Man page
iter,McmcParams-method Man page
iter,MixtureModel-method Man page
iter,burnin,nStarts,McmcParams-method Man page
iter<- Man page
iter<-,McmcParams,ANY-method Man page
iter<-,McmcParams-method Man page
iter<-,MixtureModel,ANY-method Man page
iter<-,MixtureModel-method Man page
k Man page
k,Hyperparameters-method Man page
k,MixtureModel-method Man page
k,TrioBatchModel-method Man page
k<- Man page
k<-,Hyperparameters-method Man page
k<-,HyperparametersTrios-method Man page
k<-,MixtureModel-method Man page
k<-,TrioBatchModel-method Man page
label_switch Man page
label_switch,MixtureModel-method Man page
logBayesFactor Man page
logPrior Man page
logPrior,McmcChains-method Man page
logPrior,MixtureModel-method Man page
log_lik Man page
log_lik,McmcChains-method Man page
log_lik,MixtureModel-method Man page
m2.0 Man page
m2.0,Hyperparameters-method Man page
m2.0,MixtureModel-method Man page
mapCnProbability Man page
mapCopyNumber Man page
mapParams Man page
map_z Man page
mapping Man page
mapping,MultiBatchCopyNumber,numeric-method Man page
mapping,MultiBatchCopyNumber-method Man page
mapping,MultiBatchCopyNumberPooled,numeric-method Man page
mapping,MultiBatchCopyNumberPooled-method Man page
mapping<- Man page
mapping<-,MultiBatchCopyNumber,character-method Man page
mapping<-,MultiBatchCopyNumberPooled,character-method Man page
marginalLik Man page
marginalLikelihood Man page
marginalLikelihood,MultiBatchModel,ANY-method Man page
marginalLikelihood,MultiBatchModel-method Man page
marginalLikelihood,MultiBatchPooled-method Man page
marginalLikelihood,list,ANY-method Man page
marginalLikelihood,list-method Man page
marginal_lik Man page
marginal_lik,MixtureModel-method Man page
marginal_lik<- Man page
marginal_lik<-,MixtureModel,numeric-method Man page
mcmcParams Man page
mcmcParams,MixtureModel-method Man page
mcmcParams,list-method Man page
mcmcParams<- Man page
mcmcParams<-,MixtureModel,ANY-method Man page
mcmcParams<-,TrioBatchModel,ANY-method Man page
mcmcParams<-,list,ANY-method Man page
mlParams Man page
modelName,MixtureModel-method Man page
modes Man page
modes,MixtureModel-method Man page
modes<- Man page
modes<-,MixtureModel-method Man page
mu Man page
mu,McmcChains-method Man page
mu,MixtureModel-method Man page
mu,MultiBatchModel-method Man page
muMean Man page
muc Man page
nStarts Man page
nStarts,McmcParams-method Man page
nStarts,MixtureModel-method Man page
nStarts<- Man page
nStarts<-,McmcParams,ANY-method Man page
nStarts<-,McmcParams-method Man page
nStarts<-,MixtureModel,ANY-method Man page
nStarts<-,MixtureModel-method Man page
names,McmcChains-method Man page
nu.0 Man page
nu.0,McmcChains-method Man page
nu.0,MixtureModel-method Man page
numberObs Man page
numberObs,MixtureModel-method Man page
oned Man page
oned,MixtureModel-method Man page
orderModels Man page
p,MixtureModel-method Man page
pic Man page
posteriorPredictive Man page
posteriorSimulation Man page
posteriorSimulation,MixtureModel-method Man page
posteriorSimulation,TrioBatchModel-method Man page
posterior_cases Man page
pp Man page
probCopyNumber Man page
probCopyNumber,MultiBatchCopyNumber-method Man page
probCopyNumber,MultiBatchCopyNumberPooled-method Man page
probz Man page
probz,MixtureModel-method Man page
probzpar Man page
probzpar,TrioBatchModel-method Man page
qInverseTau2 Man page
saveBatch Man page
sigma Man page
sigma,MixtureModel-method Man page
sigma,MultiBatchCopyNumberPooled-method Man page
sigma2 Man page
sigma2,McmcChains-method Man page
sigma2,MixtureModel-method Man page
sigma2,MultiBatchCopyNumberPooled-method Man page
sigma2,MultiBatchPooled-method Man page
sigma2,missing-method Man page
sigma2.0 Man page
sigma2.0,McmcChains-method Man page
sigma2.0,MixtureModel-method Man page
sigma2<-,MultiBatchCopyNumberPooled,ANY-method Man page
sigma2<-,MultiBatchCopyNumberPooled-method Man page
sigma2<-,MultiBatchPooled,ANY-method Man page
sigma<- Man page
sigma<-,MultiBatchCopyNumberPooled-method Man page
sigma_,MultiBatchCopyNumberPooled-method Man page
sigmac Man page
simulateBatchData Man page
simulateData Man page
singleBatchGuided,MultiBatchList,MultiBatch-method Man page
tau Man page
tau2 Man page
tau2,McmcChains-method Man page
tau2,MixtureModel-method Man page
tauMean Man page
tauc Man page
theta Man page
theta,McmcChains-method Man page
theta,MixtureModel-method Man page
theta<- Man page
thin Man page
thin,McmcParams-method Man page
thin,MixtureModel-method Man page
thin<- Man page
thin<-,MixtureModel,numeric-method Man page
tileMedians Man page
tileSummaries Man page
triodata_lrr Man page
upSample2 Man page
y Man page
y,MixtureModel-method Man page
z Man page
z,MixtureModel-method Man page
zFreq Man page
zFreq,McmcChains-method Man page
zFreq,MixtureModel-method Man page
zFreqPar Man page
zFreqPar,McmcChains-method Man page
zfreq,McmcChains-method Man page
zfreq,MixtureModel-method Man page
zfreqpar,McmcChains-method Man page
CNPBayes documentation built on May 6, 2019, 4:06 a.m.