API for CNVPanelizer
Reliable CNV detection in targeted sequencing applications
| Global functions | |
|---|---|
| AmplProb | Source code |
| AmplProbMultipeSamples | Source code |
| Background | Man page Source code |
| BackgroundReport | Source code |
| BamIndexFilepaths | Source code |
| BedToGenomicRanges | Man page Source code |
| BootList | Man page Source code |
| CNVPanelizer | Man page Source code |
| CNVPanelizer-package | Man page |
| CNVPanelizerFromReadCounts | Man page Source code |
| CNVPanelizerFromReadCountsHELPER | Man page Source code |
| CNVPanelizerServer | Source code |
| CNVPanelizerUI | Source code |
| CheckSignificance | Source code |
| CollectColumnFromAllReportTables | Man page Source code |
| CombinedNormalizedCounts | Man page |
| ConsensusCheck | Source code |
| CreateSessionInputDirectory | Source code |
| CreateSessionOutputDirectory | Source code |
| DescriptiveStatistics | Source code |
| EmptySessionOutputDirectory | Source code |
| GeneMeanRatioMatrix | Source code |
| GenePositionMean | Source code |
| GenerateSynthetic | Source code |
| GetGeneRegionsBand | Source code |
| GetGeneRegionsStatusSummary | Source code |
| GetSessionInputDirectory | Source code |
| GetSessionOutputDirectory | Source code |
| HaveMininumNumberOfAmplicons | Source code |
| IndexGenesPositions | Source code |
| IndexMultipleBams | Man page Source code |
| IterateAmplNum | Source code |
| KaryotypeAberrationPlot | Source code |
| MoveFileTo | Source code |
| NonSignificantGeneIndex | Source code |
| NormalizeCounts | Man page Source code |
| NumberOfUniqueAmplicons | Source code |
| PlotBootstrapDistributions | Man page Source code |
| PoolsPlots | Source code |
| PositionMean | Source code |
| RatioMatrix | Source code |
| ReadCountsFromBam | Man page Source code |
| ReadXLSXToList | Man page Source code |
| ReliableStatus | Source code |
| RemSigGenes | Source code |
| ReportTables | Man page Source code |
| RunCNVPanelizerShiny | Man page Source code |
| SampleNoiseGenes | Source code |
| SampleRatio | Source code |
| SampleReadCountsByPool | Source code |
| SampleReadCountsPools | Source code |
| SelectReferenceSet | Source code |
| SelectReferenceSetByInterquartileRange | Man page Source code |
| SelectReferenceSetByKmeans | Man page Source code |
| SelectReferenceSetByPercentil | Man page Source code |
| SelectReferenceSetFromReadCounts | Man page Source code |
| StatusHeatmap | Man page Source code |
| Strict | Source code |
| SubsamplingPositions | Source code |
| UploadedFilepaths | Source code |
| VerifiyIfOutputDirectoryExistsOrIsNotEmpty | Source code |
| WriteListToXLSX | Man page Source code |
| adjustedLength | Source code |
| countAmplicons | Source code |
| enforceDeterministicResult | Source code |
| fixUploadedFilesNames | Source code |
| multiplot | Source code |
| ratiosMean | Source code |
| referenceReadCounts | Man page |
| revalueDF | Source code |
| roundDf | Source code |
| sampleReadCounts | Man page |
| tss | Source code |
