SelectReferenceSetByInterquartileRange: SelectReferenceSetByInterquartileRange
In CNVPanelizer: Reliable CNV detection in targeted sequencing applications

Description Usage Arguments Value Author(s) Examples

View source: R/FolderAnalysis_functions.R

Select a reference set using a factor of the Interquartile Range

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    SelectReferenceSetByInterquartileRange(allSamplesReadCounts,
                                  	   normalizationMethod = "tmm",
                                           iqrFactor = 1)

`allSamplesReadCounts`	All samples read counts matrix
`normalizationMethod`	tmm (trimmed mean of m values) or tss (total sum scaling)
`iqrFactor`	Interquantile range factor

Returns a list of sample identifiers to be used as reference

Cristiano Oliveira

    
    
    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  iqrFactor = 1)