Files in CNVPanelizer

Reliable CNV detection in targeted sequencing applications

run_tests.R README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/sampleReadCounts.RData

data/referenceReadCounts.RData

R/Library.R R/ui.R R/SyntheticData.R R/server.R R/FolderAnalysis_functions.R

vignettes/CNVPanelizer.bib

vignettes/CNVPanelizer.Rnw

man/BedToGenomicRanges.Rd man/NormalizedCounts.Rd man/CNVPanelizerFromReadCounts.Rd man/ReportTables.Rd man/StatusHeatmap.Rd man/IndexMultipleBams.Rd man/SelectReferenceSetByPercentil.Rd man/SelectReferenceSetFromReadCounts.Rd man/CombinedNormalizedCounts.Rd man/SelectReferenceSetByKmeans.Rd man/ReadXLSXToList.Rd man/PlotBootstrapDistributions.Rd man/ReadCountsFromBam.Rd man/referenceReadCounts.Rd man/CollectColumnFromAllReportTables.Rd man/RunCNVPanelizerShiny.Rd man/BootList.Rd man/SelectReferenceSetByInterquartileRange.Rd man/Background.Rd man/CNVPanelizerFromReadCountsHelper.Rd man/CNVPanelizer-package.Rd man/sampleReadCounts.Rd man/WriteListToXLSX.Rd tests/runTests.R inst/doc/CNVPanelizer.R inst/doc/CNVPanelizer.pdf

inst/doc/CNVPanelizer.Rnw

inst/extdata/regions.bed

inst/extdata/www/favicon.png

inst/extdata/www/CNVPanelizerLogo.png

inst/unitTests/test_testing.R

CNVPanelizer documentation built on Nov. 8, 2020, 6:47 p.m.