SelectReferenceSetByPercentil: SelectReferenceSetByPercentil

In CNVPanelizer: Reliable CNV detection in targeted sequencing applications

Description

Select a reference set using percentiles

Usage

    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)

Arguments

allSamplesReadCounts	All samples read counts matrix
normalizationMethod	tmm (trimmed mean of m values) or tss (total sum scaling)
lowerBoundPercentage	Lower bound percentage
upperBoundPercentage	Upper bound percentage

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

    
    
    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)
    

CNVPanelizer documentation built on Nov. 8, 2020, 6:47 p.m.