StatusHeatmap: StatusHeatmap

In CNVPanelizer: Reliable CNV detection in targeted sequencing applications

Description

Generates a status heapmap for all samples analyzed

Usage

            StatusHeatmap(dfData,
                          statusColors = c("Deletion" = "blue",
                                           "Normal" = "green",
                                           "Amplification" = "red"),
                          header = "Status Heatmap",
                          filepath = "CNVPanelizerHeatMap.png")

Arguments

dfData	data frame with the "Amplification", "Deletion" and "Normal" status
statusColors	A named vector with the colors associated with each level
header	Header text at the plot
filepath	Filepath where the generated heatmap is saved

Value

Returns the filepath of the saved Heatmap

Author(s)

Cristiano Oliveira

Examples

    
    
            StatusHeatmap(dfData,
                          statusColors = c("Deletion" = "blue",
                                           "Normal" = "green",
                                           "Amplification" = "red"),
                          header = "Status Heatmap",
                          filepath = "CNVPanelizerHeatMap.png")
    

CNVPanelizer documentation built on Nov. 8, 2020, 6:47 p.m.