API for COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
| Global functions | |
|---|---|
| COHCAP.BSSeq.preprocess | Man page |
| COHCAP.BSSeq_V2.methyl.table | Man page Source code |
| COHCAP.annotate | Man page |
| COHCAP.avg.by.island | Man page |
| COHCAP.avg.by.site | Man page |
| COHCAP.denovo | Man page |
| COHCAP.integrate.avg.by.island | Man page |
| COHCAP.integrate.avg.by.site | Man page |
| COHCAP.qc | Man page |
| COHCAP.reformatFinalReport | Man page |
| COHCAP.site | Man page |
| `COHCAP.denovo` | Source code |
| `COHCAP.reformatFinalReport` | Source code |
| annova.2way.pvalue | Source code Source code Source code |
| annova.pvalue | Source code |
| anova.pvalue | Source code Source code |
| colLab | Source code |
| cor.dist | Source code Source code |
| cor.test.est | Source code |
| cor.test.pvalue | Source code |
| count.observed | Source code Source code |
| cpp.ANOVA.1way.wrapper | Source code Source code |
| cpp.annova.2way.wrapper | Source code Source code |
| cpp.lm.1var.wrapper | Source code Source code |
| cpp.paired.ttest.wrapper | Source code Source code |
| cpp.ttest.wrapper | Source code Source code |
| custom.cor | Source code Source code |
| custom.mean | Source code Source code Source code |
| fastLm_wrapper | Source code Source code |
| fastLm_wrapper2 | Source code Source code |
| lm.pvalue | Source code Source code |
| lm.pvalue2 | Source code Source code |
| ttest2 | Source code Source code |
