Man pages for Category
Category Analysis

applyByCategoryApply a function to a vector of statistics, by category
Category-defunctDefunct Functions in Package 'Category'
cateGOryMatrixConstruct a category membership matrix from a list of gene...
categoryToEntrezBuilderReturn a list mapping category ids to Entrez Gene ids
cb_contingencyCreate and Test Contingency Tables of Chromosome Band...
cb_parse_band_HsParse Homo Sapiens Chromosome Band Annotations
cb_parse_band_MmParse Mus Musculus Chromosome Band Annotations
cb_testChromosome Band Tree-Based Hypothesis Testing
ChrBandTree-classClass "ChrBandTree"
ChrMapHyperGParams-classClass "ChrMapHyperGParams"
ChrMapHyperGResult-classClass "ChrMapHyperGResult"
ChrMapLinearMParams-classClass "ChrMapLinearMParams"
ChrMapLinearMResult-classClass "ChrMapLinearMResult"
DatPkg-classClass "DatPkg"
effectSizeExtract estimated effect sizes
exampleLevelsDisplay a sample node from each level of a ChrBandTree object
findAMstatsCompute per category summary statistics
getPathNamesA function to print pathway names given their numeric ID.
GOHyperGParams-classClass "GOHyperGParams"
GSEAGOHyperGParamsHelper function for constructing a GOHyperGParams objects or...
gseattpermPermutation p-values for GSEA
hypergHypergeometric (gene set enrichment) tests on character...
HyperGParams-classClass "HyperGParams"
HyperGResult-accessorsAccessors for HyperGResult Objects
HyperGResultBase-classClass "HyperGResultBase"
HyperGResult-classClass "HyperGResult"
hyperGTestHypergeometric Test for association of categories and genes
KEGGHyperGParams-classClass "KEGGHyperGParams" and "PFAMHyperGParams"
LinearMParams-classClass "LinearMParams"
LinearMResultBase-classClass "LinearMResultBase"
LinearMResult-classClass "LinearMResult"
linearMTestA linear model-based test to detect enrichment of unusual...
local_test_factoryLocal and Global Test Function Factories
makeChrBandGraphCreate a graph representing chromosome band annotation data
makeEBcontrA function to make the contrast vectors needed for EBarrays
makeValidParamsNon-standard Generic for Checking Validity of Parameter...
MAPAmatMapping chromosome bands to genes
NewChrBandTreeCreate a new ChrBandTree object
OBOHyperGParams-classClass "OBOHyperGParams"
probes2MAPMap probe IDs to MAP regions.
probes2PathA function to map probe identifiers to pathways.
tree_visitorTree Visitor Function
ttpermA simple function to compute a permutation t-test.
universeBuilderReturn a vector of gene identifiers with category annotations
Category documentation built on Nov. 8, 2020, 10:58 p.m.