probes2Path: A function to map probe identifiers to pathways.
In Category: Category Analysis
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Given a set of probe identifiers from a microarray this function looks
up all KEGG pathways that the probe is documented to be involved in.
Usage
1
probes2Path(pids, data = "hgu133plus2")
Arguments
pids
A vector of probe identifiers.
data
The character name of the chip.
Details
This is a simple look up in the appropriate chip PATH data
environment.
Value
A list of pathway vectors. One element for each value of pid
that is mapped to at least one pathway.
Author(s)
R. Gentleman
See Also
Examples
1
2
3
library("hgu95av2.db")
x = c("1001_at", "1000_at")
probes2Path(x, "hgu95av2.db")
Category documentation built on Nov. 8, 2020, 10:58 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Given a set of probe identifiers from a microarray this function looks up all KEGG pathways that the probe is documented to be involved in.
Usage
1 | probes2Path(pids, data = "hgu133plus2")
|
Arguments
pids |
A vector of probe identifiers. |
data |
The character name of the chip. |
Details
This is a simple look up in the appropriate chip PATH data
environment.
Value
A list of pathway vectors. One element for each value of pid
that is mapped to at least one pathway.
Author(s)
R. Gentleman
See Also
Examples
1 2 3 | library("hgu95av2.db")
x = c("1001_at", "1000_at")
probes2Path(x, "hgu95av2.db")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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