These functions return functions appropriate for use as the
tfun argument to
In particular, it is these functions that are associated with the
"local" and "global" options for the
type argument to
A vector of gene IDs. The IDs should match those used
to annotatate the
A contingency table testing function. The behavior
of this function must be reasonably close to that of
A p-value cutoff that will be used to determine if a given
test is significant or not when using
A logical value indicating whether a conditional test should be performed.
The returned functions have signature
f(start, g, prev_ans)
start is a vector of start nodes,
g is a
chromosome band tree graph, and
prev_ans can contain the
previous result returned by a call to this function.
A function that can be used as the
tfun argument to the tree
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