HyperGResultBase-class: Class "HyperGResultBase"

In Category: Category Analysis

Description

This VIRTUAL class represents common elements of the return values of generic functions like hyperGTest. All subclasses are intended to implement the accessor functions documented at HyperGResult-accessors.

Objects from the Class

A virtual Class: No objects may be created from it.

Slots

annotation:

Object of class "character" giving the name of the annotation data package used.

geneIds:

Object of class "ANY" (usually a character vector, but sometimes an integer vector). The input vector of gene identifiers intersected with the universe of gene identifiers used in the computation.

testName:

Object of class "character" identifying the testing method used.

pvalueCutoff:

Numeric value used by the testing method as a p-value cutoff. Not all testing methods use this. Also used by the show method to count number of significant terms.

testDirection:

A string indicating whether the test performed was for overrepresentation ("over") or underrepresentation("under").

Methods

See HyperGResult-accessors.

Author(s)

Seth Falcon

See Also

HyperGResult-class GOHyperGResult-class HyperGResult-accessors

Category documentation built on Nov. 8, 2020, 10:58 p.m.