- Home
- Bioconductor
**CellNOptR**: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.**plotCNOlist**: Plot the data in a CNOlist

# Plot the data in a CNOlist

### Description

This function plots the data in a CNOlist as a matrix of plots with a row for each condition and a column for each signal, and an extra plot for each row that specifies which cues are present..

### Usage

1 |

### Arguments

`CNOlist` |
a CNOlist |

### Details

This function can plot the normalised values or the un-normalised ones, it just needs a CNOlist.

### Value

This function just produces a plot on your graphics window

### Author(s)

C. Terfve

### See Also

plotCNOlistPDF, plotCNOlistLarge, plotCNOlistLargePDF

### Examples

1 2 | ```
data(CNOlistToy,package="CellNOptR")
plotCNOlist(CNOlistToy)
``` |

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.

- buildBitString: Build the final bit string vector and times vector based on a...
- CellNOptR-package: R version of CellNOptR, boolean features
- checkSignals: Check the CNOlist and model matching
- CNOdata: Get data from a CellNOpt data repository
- CNOlist-class: Class '"CNOlist"'
- CNOlistDREAM: Data used for the DREAM3 challenge
- CNOlist-methods: List of CNOlist-class methods
- CNOlistToy: Toy data
- CNOlistToy2: Toy data with 2 time points
- CNOlistToyMMB: Toy data
- CNORbool: Simple Boolean analysis standalone
- CNORwrap: CNOR analysis wrapper
- compressModel: Compress a model
- computeScoreT1: Compute the score of a model/data set using a bitString to...
- computeScoreTN: Compute the score at TN of a model/data set using a bitString...
- cSimulator: C-implementation of simulatorT1.
- cutAndPlot: Interface to cutAndPlotResults functions.
- cutAndPlotResultsT1: Plot the results of an optimisation at t1
- cutAndPlotResultsTN: Plot the results of an optimisation at tN
- cutCNOlist: Cut a CNOlist structure according to a model
- cutModel: Cut a model structure according to a bitstring
- cutNONC: Cuts the non-observable/non-controllable species from the...
- cutSimList: Cut a simList structure according to a bitstring
- defaultParameters: Create a list of default parameters
- DreamModel: Model used for the DREAM3 challenge
- exhaustive: Exhaustive search over the optimisation of a PKN model on...
- expandGates: Expand the gates of a model
- findNONC: Find the indexes of the non-observable and non controllable...
- gaBinaryT1: Genetic algorithm used to optimise a model
- gaBinaryT2: Genetic algorithm for time point 2
- gaBinaryTN: Genetic algorithm for time point N
- getFit: Compute the score of a model
- graph2sif: Convert graph to SIF
- indexFinder: Finds the indices, in the model fields, of the species that...
- internals: List of CellNOptR internal functions.
- makeCNOlist: Make a CNOlist structure
- mapBack: Map an optimised model back onto the PKN model.
- model2igraph: Convert a model object to a igraph object
- model2sif: Convert a model object in sif format
- normaliseCNOlist: Normalisation for boolean modelling.
- plotCNOlist: Plot the data in a CNOlist
- plotCNOlist2: Another version of plotCNOlist that allows to plot 2 cnolist...
- plotCNOlistLarge: Plot the data in a CNOlist, for lists with many conditions.
- plotCNOlistLargePDF: Plots a CNOlist into a pdf file, for lists with many...
- plotCNOlistPDF: Plots a CNOlist into a pdf file.
- plotFit: Plot the evolution of an optimisation
- plot-methods: plot a '"CNOlist"' object - methods
- plotModel: Plot a model
- plotOptimResults: Plot the data and simulated values
- plotOptimResultsPan: Plots the data and simulated values from any CellNOptR...
- plotOptimResultsPDF: Plot the data and simulated values in a pdf file
- prep4sim: Prepare a model for simulation
- preprocessing: Performs the pre-processing steps
- randomizeCNOlist: add noise to the data contained in a CNOlist.
- readMIDAS: Reads in a CSV MIDAS file
- readSBMLQual: Read a SBMLQual document and returns a SIF object (as...
- readSIF: Read a SIF file and create a model object
- residualError: Compute the residual error for a dataset
- sif2graph: Convert sif to graph
- simulateT1: deprecated since version 1.3.28. Cut and simulation of a...
- simulateTN: Cut and simulation of a boolean model at t1
- simulatorT0: Simulation of a boolean model
- simulatorT1: Simulation of a boolean model
- simulatorT2: Deprecated since 1.3.28. Use simulateTN function instead....
- simulatorTN: Simulation of a boolean model at any time points dependent on...
- ToyModel: Toy model
- ToyModel2: Toy model
- writeDot: Write a model, and attached features, to a dot file
- writeMIDAS: Write a CNOlist structure into a MIDAS file
- writeNetwork: Write a previous knowledge network model to a sif file (with...
- writeReport: Write a report of a CellNOptR analysis
- writeScaffold: Writes the scaffold network to a sif file (with attributes)...
- writeSIF: Convert a model into a SIF format and save the result in a...