plotFit: Plot the evolution of an optimisation

Description Usage Arguments Value Author(s) See Also Examples

View source: R/plotFit.R

Description

This function takes in the results of an optimisation by gaBinaryT1 and plots the evolution of best fit and average fit against generations.

Usage

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plotFit(optRes, filename = NULL)

Arguments

optRes

an object created by the optimisation engine (gabinaryT1)

filename

NULL or string: if provided, the plot is save in PDF format in the filename.

Value

This function doesn't return anything, it just produces a plot in your graphics window.

Author(s)

C. Terfve

See Also

gaBinaryT1

Examples

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data(CNOlistToy,package="CellNOptR")
data(ToyModel,package="CellNOptR")

#process the model
model = preprocessing(CNOlistToy,ToyModel)

#optimise

ToyT1opt<-gaBinaryT1(
	CNOlist=CNOlistToy,
	model=model,
	maxGens=10,
	popSize=10,
	verbose=FALSE)

plotFit(optRes=ToyT1opt)

CellNOptR documentation built on May 31, 2017, 11:33 a.m.