ChIC: Quality Control Pipeline for ChIP-Seq Data

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Package details

AuthorCarmen Maria Livi
Bioconductor views ChIPSeq QualityControl
MaintainerCarmen Maria Livi <[email protected]>
LicenseGPL-2
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ChIC")

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ChIC documentation built on May 6, 2019, 3:42 a.m.