ChIC: Quality Control Pipeline for ChIP-Seq Data

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Package details

AuthorCarmen Maria Livi
Bioconductor views ChIPSeq QualityControl
MaintainerCarmen Maria Livi <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the ChIC package in your browser

Any scripts or data that you put into this service are public.

ChIC documentation built on Nov. 8, 2020, 5:15 p.m.