listDatasets: Lists the IDs of samples included in the compendium
In ChIC: Quality Control Pipeline for ChIP-Seq Data
Description
Usage
Arguments
Value
Examples
View source: R/GlobalFunctions.R
Description
Shows the IDs of all analysed ChIP-seq samples
included in the compendium from ENCODE and Roadmap.
listDatasets
Usage
1
listDatasets(dataset)
Arguments
dataset
String, to specify the dataset for which the IDs
have to be returned. Valid keywords are "ENCODE" and "Roadmap".
Value
"ENCODE" returns a vecor of transcription factor, chromatin mark
and RNAPol2 sample IDs from ENCODE, "Roadmap" returns a vector of
chromatin mark IDs from Roadmap that have been included in the compendium.
Examples
1
2
listDatasets(dataset="ENCODE")
listDatasets(dataset="Roadmap")
ChIC documentation built on Nov. 8, 2020, 5:15 p.m.
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Description Usage Arguments Value Examples
View source: R/GlobalFunctions.R
Description
Shows the IDs of all analysed ChIP-seq samples included in the compendium from ENCODE and Roadmap.
listDatasets
Usage
1 | listDatasets(dataset)
|
Arguments
dataset |
String, to specify the dataset for which the IDs have to be returned. Valid keywords are "ENCODE" and "Roadmap". |
Value
"ENCODE" returns a vecor of transcription factor, chromatin mark and RNAPol2 sample IDs from ENCODE, "Roadmap" returns a vector of chromatin mark IDs from Roadmap that have been included in the compendium.
Examples
1 2 | listDatasets(dataset="ENCODE")
listDatasets(dataset="Roadmap")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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