listAvailableElements: Shows available chromatin marks and factors

In ChIC: Quality Control Pipeline for ChIP-Seq Data

Description

Lists chromatin marks and transcription factors that are available to be used for the comparison analysis by the fuctions metagenePlotsForComparison(), plotReferenceDistribution() and predictionScore().

listAvailableElements

Usage

listAvailableElements(target)

Arguments

target

String, chromatin mark or transcription factor to be analysed. With the keywords "mark" and "TF" the respective lists with the available elements are listed.

Value

List of elements or single string

Examples

listAvailableElements(target="CTCF")
listAvailableElements(target="H3K36me3")
listAvailableElements(target="TF")
listAvailableElements(target="mark")

ChIC documentation built on Nov. 8, 2020, 5:15 p.m.