pie1: Pie Charts

In ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

Description

Draw a pie chart with percentage

Usage

pie1(
  x,
  labels = names(x),
  edges = 200,
  radius = 0.8,
  clockwise = FALSE,
  init.angle = if (clockwise) 90 else 0,
  density = NULL,
  angle = 45,
  col = NULL,
  border = NULL,
  lty = NULL,
  main = NULL,
  percentage = TRUE,
  rawNumber = FALSE,
  digits = 3,
  cutoff = 0.01,
  legend = FALSE,
  legendpos = "topright",
  legendcol = 2,
  radius.innerlabel = radius,
  ...
)

Arguments

x	a vector of non-negative numerical quantities. The values in x are displayed as the areas of pie slices.
labels	one or more expressions or character strings giving names for the slices. Other objects are coerced by as.graphicsAnnot. For empty or NA (after coercion to character) labels, no label nor pointing line is drawn.
edges	the circular outline of the pie is approximated by a polygon with this many edges.
radius	the pie is drawn centered in a square box whose sides range from -1 to 1. If the character strings labeling the slices are long it may be necessary to use a smaller radius.
clockwise	logical indicating if slices are drawn clockwise or counter clockwise (i.e., mathematically positive direction), the latter is default.
init.angle	number specifying the starting angle (in degrees) for the slices. Defaults to 0 (i.e., "3 o'clock") unless clockwise is true where init.angle defaults to 90 (degrees), (i.e., "12 o'clock").
density	the density of shading lines, in lines per inch. The default value of NULL means that no shading lines are drawn. Non-positive values of density also inhibit the drawing of shading lines.
angle	the slope of shading lines, given as an angle in degrees (counter-clockwise).
col	a vector of colors to be used in filling or shading the slices. If missing a set of 6 pastel colours is used, unless density is specified when par("fg") is used.
border, lty	(possibly vectors) arguments passed to polygon which draws each slice.
main	an overall title for the plot.
percentage	logical. Add percentage in the figure or not. default TRUE.
rawNumber	logical. Instead percentage, add raw number in the figure or not. default FALSE.
digits	When set percentage as TRUE, how many significant digits are to be used for percentage. see format. default 3.
cutoff	When percentage is TRUE, if the percentage is lower than cutoff, it will NOT be shown. default 0.01.
legend	logical. Instead of lable, draw legend for the pie. default, FALSE.
legendpos, legendcol	legend position and legend columns. see legend
radius.innerlabel	position of percentage or raw number label relative to the circle.
...	graphical parameters can be given as arguments to pie. They will affect the main title and labels only.

Author(s)

Jianhong Ou

See Also

pie

Examples

pie1(1:5)

ChIPpeakAnno documentation built on April 1, 2021, 6:01 p.m.