plotBinOverRegions: plot the coverage of regions

In ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

Description

plot the output of binOverRegions or binOverGene

Usage

plotBinOverRegions(dat, ...)

Arguments

dat	A list of matrix which indicate the coverage of regions per bin
...	Parameters could be used by matplot

Author(s)

Jianhong Ou

See Also

binOverRegions, binOverGene

Examples

if(interactive()){
path <- system.file("extdata", package="ChIPpeakAnno")
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
library(rtracklayer)
files <- dir(path, "bigWig")
if(.Platform$OS.type != "windows"){
cvglists <- lapply(file.path(path, files), import,
                   format="BigWig", as="RleList")
names(cvglists) <- sub(".bigWig", "", files)
d <- binOverGene(cvglists, TxDb.Hsapiens.UCSC.hg19.knownGene)
plotBinOverRegions(d)
}
}

ChIPpeakAnno documentation built on April 1, 2021, 6:01 p.m.