Description Usage Arguments Value Author(s) Examples
Write the sequences obtained from getAllPeakSequence to a file in fasta format leveraging writeFASTA in Biostrings package. FASTA is a simple file format for biological sequence data. A FASTA format file contains one or more sequences and there is a header line which begins with a > proceeding each sequence.
1 | write2FASTA(mySeq, file = "", width = 80)
|
mySeq |
GRanges with varibles name and sequence ,e.g., results obtained from getAllPeakSequence |
file |
Either a character string naming a file or a connection open for reading or writing. If "" (the default for write2FASTA), then the function writes to the standard output connection (the console) unless redirected by sink |
width |
The maximum number of letters per line of sequence |
Output as FASTA file format to the naming file or the console.
Lihua Julie Zhu
1 2 3 4 5 6 7 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.