| $,ReadCounts-method |
Man page
|
| $<-,ReadCounts,ANY-method |
Man page
|
| $<-,ReadCounts-method |
Man page
|
| .fixCounts |
Source code
|
| .headTail |
Source code
|
| .noOverlap |
Source code
|
| .nucFreq |
Source code
|
| .oligonucSim |
Source code
|
| .oneWayTest |
Source code
|
| .plotBind |
Source code
|
| .plotReads |
Man page
Source code
|
| .plotWindow |
Man page
Source code
|
| .score2pval |
Source code
|
| .showHeader |
Source code
|
| .triNucStat |
Source code
|
| .twoWayTest |
Source code
|
| BindScore |
Man page
Source code
|
| BindScore-class |
Man page
|
| ChIPseqR |
Man page
|
| ChIPseqR-package |
Man page
|
| RLEBindScore-class |
Man page
|
| RLEReadCounts-class |
Man page
|
| ReadCounts |
Man page
Source code
|
| ReadCounts-class |
Man page
|
| [,BindScore,ANY,missing,missing-method |
Man page
|
| [,ReadCounts,ANY,missing,missing-method |
Man page
|
| [<-,ReadCounts,ANY,missing,ANY-method |
Man page
|
| [<-,ReadCounts,ANY,missing-method |
Man page
|
| [[,BindScore,ANY,missing-method |
Man page
|
| [[,BindScore,ANY,numeric-method |
Man page
|
| [[,ReadCounts,ANY,missing-method |
Man page
|
| [[<-,ReadCounts,ANY,missing,ANY-method |
Man page
|
| [[<-,ReadCounts,ANY,missing-method |
Man page
|
| alignFeature |
Man page
Source code
|
| allGroups |
Man page
Source code
|
| allWords |
Man page
Source code
|
| as.data.frame,BindScore-method |
Man page
|
| binding |
Man page
|
| binding,ANY-method |
Man page
|
| binding,BindScore-method |
Man page
|
| binding-methods |
Man page
|
| callBindingSites |
Man page
|
| callBindingSites,ANY-method |
Man page
|
| callBindingSites,ReadCounts-method |
Man page
|
| callBindingSites,character-method |
Man page
|
| callBindingSites,matrix-method |
Man page
|
| callBindingSites-methods |
Man page
|
| chrLength |
Man page
|
| chrLength,BindScore-method |
Man page
|
| chrLength,RLEReadCounts-method |
Man page
|
| chrLength,ReadCounts-method |
Man page
|
| compress |
Man page
|
| compress,BindScore-method |
Man page
|
| compress,RLEBindScore-method |
Man page
|
| compress,RLEReadCounts-method |
Man page
|
| compress,ReadCounts-method |
Man page
|
| compress-BindScore |
Man page
|
| compress-methods |
Man page
|
| cutoff |
Man page
|
| cutoff,ANY-method |
Man page
|
| cutoff,BindScore-method |
Man page
|
| cutoff-methods |
Man page
|
| cutoff<- |
Man page
|
| cutoff<-,ANY-method |
Man page
|
| cutoff<-,BindScore-method |
Man page
|
| cutoff<--methods |
Man page
|
| decompress |
Man page
|
| decompress,ANY-method |
Man page
|
| decompress,RLEBindScore-method |
Man page
|
| decompress,RLEReadCounts-method |
Man page
|
| decompress,Rle-method |
Man page
|
| decompress,RleList-method |
Man page
|
| decompress-methods |
Man page
|
| diNucTest |
Man page
Source code
|
| exportBindSequence |
Man page
Source code
|
| getBindCor |
Man page
Source code
|
| getBindLen |
Man page
Source code
|
| getCutoff |
Man page
Source code
|
| head,BindScore-method |
Man page
|
| lapply,BindScore-method |
Man page
|
| lapply,ReadCounts-method |
Man page
|
| length,BindScore-method |
Man page
|
| length,ReadCounts-method |
Man page
|
| length<-,BindScore-method |
Man page
|
| length<-,ReadCounts-method |
Man page
|
| max,BindScore-method |
Man page
|
| min,BindScore-method |
Man page
|
| names,BindScore-method |
Man page
|
| names,ReadCounts-method |
Man page
|
| names<-,BindScore,ANY-method |
Man page
|
| names<-,ReadCounts,ANY-method |
Man page
|
| nreads |
Man page
|
| nreads,RLEReadCounts-method |
Man page
|
| nreads,ReadCounts-method |
Man page
|
| nullDist |
Man page
|
| nullDist,ANY-method |
Man page
|
| nullDist,BindScore-method |
Man page
|
| nullDist-methods |
Man page
|
| nullDist<- |
Man page
|
| nullDist<-,ANY-method |
Man page
|
| nullDist<-,BindScore-method |
Man page
|
| nullDist<--methods |
Man page
|
| oligoNucTest |
Man page
Source code
|
| peaks |
Man page
|
| peaks,ANY-method |
Man page
|
| peaks,BindScore-method |
Man page
|
| peaks-methods |
Man page
|
| pickPeak |
Man page
Source code
|
| plot,BindScore,missing-method |
Man page
|
| plot,RLEReadCounts,missing-method |
Man page
|
| plot,ReadCounts,missing-method |
Man page
|
| plotBind |
Man page
|
| plotFreq |
Man page
Source code
|
| pos2gff |
Man page
Source code
|
| pvalue |
Man page
|
| pvalue,ANY-method |
Man page
|
| pvalue-methods |
Man page
|
| range,BindScore-method |
Man page
|
| sapply,ReadCounts-method |
Man page
|
| score |
Man page
|
| score,BindScore-method |
Man page
|
| simpleNucCall |
Man page
Source code
|
| startScore |
Man page
Source code
|
| strandPileup |
Man page
|
| strandPileup,AlignedRead-method |
Man page
|
| strandPileup,data.frame-method |
Man page
|
| strandPileup-methods |
Man page
|
| support |
Man page
|
| support,ANY-method |
Man page
|
| support,BindScore-method |
Man page
|
| support-methods |
Man page
|
| tail,BindScore-method |
Man page
|
| triNucTest1 |
Man page
Source code
|
| triNucTest2 |
Man page
Source code
|
| views2nucFreq |
Man page
Source code
|
| windowCounts |
Man page
Source code
|
