getBindCor: Calculate cross-correlation between read counts

In ChIPseqR: Identifying Protein Binding Sites in High-Throughput Sequencing Data

Description

This function calculates the cross-correlation between read counts on forward and reverse strand.

Usage

getBindCor(data, max.lag, summary, plot = TRUE, ...)

Arguments

data	An object of class ReadCounts
max.lag	Maximum lag to use in cross-correlation calculation.
summary	Function to use to summarise cross-correlation across chromosomes.
plot	Logical indicating whether to plot cross-correlation.
...	Further arguments, currently ignored.

Details

Function fttcor in package “timsac” is used to carry out the computation.

Value

The (summarised) cross-correlation. If summary is missing a list of cross-correlations for each chromosome is returned.

Author(s)

Peter Humburg

See Also

fftcor, ReadCounts, getBindLen

ChIPseqR documentation built on Nov. 8, 2020, 6:49 p.m.