plot-BindScore: Diagnostic Plots for Binding Site Scores

In ChIPseqR: Identifying Protein Binding Sites in High-Throughput Sequencing Data

Description

Generates plots to assess the fit of the estimated null distribution.

Usage

## S4 method for signature 'BindScore,missing'
plot(x, npoints = 10000, type=c("density", "qqplot"), ...)

Arguments

x	An object of class BindScore.
npoints	Maximum number of points to plot in a QQ-plot.
type	Character string indicating the plot type.
...	Further arguments (currently ignored).

Details

Type ‘density’ produces a histogram of binding site scores with overlaid null distribution. Type ‘qqplot’ produces a normal QQ-plot comparing the observed binding site scores to the null distribution.

Value

Called for its side effect.

Author(s)

Peter Humburg

ChIPseqR documentation built on Nov. 8, 2020, 6:49 p.m.