API for ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data

Global functions
$,ReadCounts-method Man page
$<-,ReadCounts,ANY-method Man page
$<-,ReadCounts-method Man page
.fixCounts Source code
.headTail Source code
.noOverlap Source code
.nucFreq Source code
.oligonucSim Source code
.oneWayTest Source code
.plotBind Source code
.plotReads Man page Source code
.plotWindow Man page Source code
.score2pval Source code
.showHeader Source code
.triNucStat Source code
.twoWayTest Source code
BindScore Man page Source code
BindScore-class Man page
ChIPseqR Man page
ChIPseqR-package Man page
RLEBindScore-class Man page
RLEReadCounts-class Man page
ReadCounts Man page Source code
ReadCounts-class Man page
[,BindScore,ANY,missing,missing-method Man page
[,ReadCounts,ANY,missing,missing-method Man page
[<-,ReadCounts,ANY,missing,ANY-method Man page
[<-,ReadCounts,ANY,missing-method Man page
[[,BindScore,ANY,missing-method Man page
[[,BindScore,ANY,numeric-method Man page
[[,ReadCounts,ANY,missing-method Man page
[[<-,ReadCounts,ANY,missing,ANY-method Man page
[[<-,ReadCounts,ANY,missing-method Man page
alignFeature Man page Source code
allGroups Man page Source code
allWords Man page Source code
as.data.frame,BindScore-method Man page
binding Man page
binding,ANY-method Man page
binding,BindScore-method Man page
binding-methods Man page
callBindingSites Man page
callBindingSites,ANY-method Man page
callBindingSites,ReadCounts-method Man page
callBindingSites,character-method Man page
callBindingSites,matrix-method Man page
callBindingSites-methods Man page
chrLength Man page
chrLength,BindScore-method Man page
chrLength,RLEReadCounts-method Man page
chrLength,ReadCounts-method Man page
compress Man page
compress,BindScore-method Man page
compress,RLEBindScore-method Man page
compress,RLEReadCounts-method Man page
compress,ReadCounts-method Man page
compress-BindScore Man page
compress-methods Man page
cutoff Man page
cutoff,ANY-method Man page
cutoff,BindScore-method Man page
cutoff-methods Man page
cutoff<- Man page
cutoff<-,ANY-method Man page
cutoff<-,BindScore-method Man page
cutoff<--methods Man page
decompress Man page
decompress,ANY-method Man page
decompress,RLEBindScore-method Man page
decompress,RLEReadCounts-method Man page
decompress,Rle-method Man page
decompress,RleList-method Man page
decompress-methods Man page
diNucTest Man page Source code
exportBindSequence Man page Source code
getBindCor Man page Source code
getBindLen Man page Source code
getCutoff Man page Source code
head,BindScore-method Man page
lapply,BindScore-method Man page
lapply,ReadCounts-method Man page
length,BindScore-method Man page
length,ReadCounts-method Man page
length<-,BindScore-method Man page
length<-,ReadCounts-method Man page
max,BindScore-method Man page
min,BindScore-method Man page
names,BindScore-method Man page
names,ReadCounts-method Man page
names<-,BindScore,ANY-method Man page
names<-,ReadCounts,ANY-method Man page
nreads Man page
nreads,RLEReadCounts-method Man page
nreads,ReadCounts-method Man page
nullDist Man page
nullDist,ANY-method Man page
nullDist,BindScore-method Man page
nullDist-methods Man page
nullDist<- Man page
nullDist<-,ANY-method Man page
nullDist<-,BindScore-method Man page
nullDist<--methods Man page
oligoNucTest Man page Source code
peaks Man page
peaks,ANY-method Man page
peaks,BindScore-method Man page
peaks-methods Man page
pickPeak Man page Source code
plot,BindScore,missing-method Man page
plot,RLEReadCounts,missing-method Man page
plot,ReadCounts,missing-method Man page
plotBind Man page
plotFreq Man page Source code
pos2gff Man page Source code
pvalue Man page
pvalue,ANY-method Man page
pvalue-methods Man page
range,BindScore-method Man page
sapply,ReadCounts-method Man page
score Man page
score,BindScore-method Man page
simpleNucCall Man page Source code
startScore Man page Source code
strandPileup Man page
strandPileup,AlignedRead-method Man page
strandPileup,data.frame-method Man page
strandPileup-methods Man page
support Man page
support,ANY-method Man page
support,BindScore-method Man page
support-methods Man page
tail,BindScore-method Man page
triNucTest1 Man page Source code
triNucTest2 Man page Source code
views2nucFreq Man page Source code
windowCounts Man page Source code
ChIPseqR documentation built on Oct. 31, 2019, 10:20 a.m.