CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data

CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.

Package details

AuthorYingxin Lin [aut, cre], Hani Kim [aut]
Bioconductor views GeneExpression SingleCell
MaintainerYingxin Lin <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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CiteFuse documentation built on April 14, 2021, 6 p.m.