visualiseKNN: visualiseKNN
In CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data
Description
Usage
Arguments
Value
Examples
Description
A function to perform louvain clustering
Usage
1
visualiseKNN(sce, colour_by = NULL, metadata = "SNF_W")
Arguments
sce
A singlecellexperiment object
colour_by
the name of coldata that is used to colour the node
metadata
indicates the meta data name of affinity matrix to virsualise
Value
A igraph plot
Examples
1
2
3
4
5
data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
SNF_W_louvain <- igraphClustering(sce_control_subset,
method = "louvain")
visualiseKNN(sce_control_subset, colour_by = "SNF_W_louvain")
CiteFuse documentation built on April 14, 2021, 6 p.m.
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Description Usage Arguments Value Examples
Description
A function to perform louvain clustering
Usage
1 | visualiseKNN(sce, colour_by = NULL, metadata = "SNF_W")
|
Arguments
sce |
A singlecellexperiment object |
colour_by |
the name of coldata that is used to colour the node |
metadata |
indicates the meta data name of affinity matrix to virsualise |
Value
A igraph plot
Examples
1 2 3 4 5 | data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
SNF_W_louvain <- igraphClustering(sce_control_subset,
method = "louvain")
visualiseKNN(sce_control_subset, colour_by = "SNF_W_louvain")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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