crossSampleDoublets: crossSampleDoublets
In CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data
Description
Usage
Arguments
Value
Examples
Description
A function that perform normalisation for alternative expression
Usage
1
crossSampleDoublets(sce, altExp_name = NULL, totalExp_threshold = 10)
Arguments
sce
A SingleCellExperiment object
altExp_name
Name of alternative expression that will be
used to perform normalisation.
If it is NULL, it will set to HTO.
totalExp_threshold
the threshold indicates for the HTO
less than this threshold
will be filtered from the analysis
Value
A SingleCellExperiment Object
Examples
1
2
3
4
5
6
data(CITEseq_example, package = "CiteFuse")
sce_citeseq <- preprocessing(CITEseq_example)
sce_citeseq <- normaliseExprs(sce = sce_citeseq,
altExp_name = "HTO",
transform = "log")
sce_citeseq <- crossSampleDoublets(sce_citeseq)
CiteFuse documentation built on April 14, 2021, 6 p.m.
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Description Usage Arguments Value Examples
Description
A function that perform normalisation for alternative expression
Usage
1 | crossSampleDoublets(sce, altExp_name = NULL, totalExp_threshold = 10)
|
Arguments
sce |
A |
altExp_name |
Name of alternative expression that will be used to perform normalisation. If it is NULL, it will set to HTO. |
totalExp_threshold |
the threshold indicates for the HTO less than this threshold will be filtered from the analysis |
Value
A SingleCellExperiment Object
Examples
1 2 3 4 5 6 | data(CITEseq_example, package = "CiteFuse")
sce_citeseq <- preprocessing(CITEseq_example)
sce_citeseq <- normaliseExprs(sce = sce_citeseq,
altExp_name = "HTO",
transform = "log")
sce_citeseq <- crossSampleDoublets(sce_citeseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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