Files in CiteFuse

CiteFuse: multi-modal analysis of CITE-seq data

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/ligandReceptor_analysis.R R/visualise_features.R R/data.R R/DEgenes.R R/clustering.R R/QCfunctions.R R/importanceADT.R R/runSNF.R R/geneADTnetwork.R R/utils.R

inst/CITATION

inst/doc/CiteFuse.html

inst/doc/CiteFuse.R inst/doc/CiteFuse.Rmd

inst/figures/CiteFuse_overview.png

build/vignette.rds

vignettes/CiteFuse.Rmd

data/datalist

data/sce_control_subset.rda

data/sce_ctcl_subset.rda

data/lr_pair_subset.rda

data/CITEseq_example.rda

man/DEgenes.Rd man/selectDEgenes.Rd man/CiteFuse.Rd man/sce_control_subset.Rd man/visualiseExprsList.Rd man/withinSampleDoublets.Rd man/reducedDimSNF.Rd man/geneADTnetwork.Rd man/DEcomparisonPlot.Rd man/visLigandReceptor.Rd man/visualiseKNN.Rd man/sce_ctcl_subset.Rd man/DEgenesCross.Rd man/visualiseExprs.Rd man/importanceADT.Rd man/lr_pair_subset.Rd man/plotHTOSingle.Rd man/visImportance.Rd man/DEbubblePlot.Rd man/preprocessing.Rd man/visualiseDim.Rd man/normaliseExprs.Rd man/crossSampleDoublets.Rd man/igraphClustering.Rd man/ligandReceptorTest.Rd man/spectralClustering.Rd man/CITEseq_example.Rd man/plotHTO.Rd man/readFrom10X.Rd

CiteFuse documentation built on April 14, 2021, 6 p.m.