spectralClustering: spectralClustering
In CiteFuse: CiteFuse: multi-modal analysis of CITE-seq data
Description
Usage
Arguments
Value
Examples
Description
A function to perform spectral clustering
Usage
1
spectralClustering(affinity, K = 20, delta = 1e-05)
Arguments
affinity
An affinity matrix
K
number of clusters
delta
delta
Value
A list indicates the spectral clustering results
Examples
1
2
3
4
data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
SNF_W <- S4Vectors::metadata(sce_control_subset)[["SNF_W"]]
SNF_W_clust <- spectralClustering(SNF_W, K = 5)
CiteFuse documentation built on April 14, 2021, 6 p.m.
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Description Usage Arguments Value Examples
Description
A function to perform spectral clustering
Usage
1 | spectralClustering(affinity, K = 20, delta = 1e-05)
|
Arguments
affinity |
An affinity matrix |
K |
number of clusters |
delta |
delta |
Value
A list indicates the spectral clustering results
Examples
1 2 3 4 | data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
SNF_W <- S4Vectors::metadata(sce_control_subset)[["SNF_W"]]
SNF_W_clust <- spectralClustering(SNF_W, K = 5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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