ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

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Vignettes
Functions
293
Source code
49
Man pages
68
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ClassifyR: A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
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API

API for ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

Global functions
.MAEtoWideTable Source code
.binValues Source code
.calcPerformance Source code
.checkVariablesAndSame Source code
.densitiesCrossover Source code
.dlda Source code
.dmvnorm_diag Source code
.doSelection Source code
.doTest Source code
.doTrain Source code
.doTransform Source code
.getEasyPredictions Source code
.methodFormals Source code
.pickFeatures Source code
.posterior_probs Source code
.predict Source code
.splitDataAndClasses Source code
.validationText Source code
ClassifyResult Man page
ClassifyResult,character,character,character,character,character Man page
ClassifyResult-class Man page
DLDApredictInterface Man page
DLDApredictInterface,dlda,DataFrame-method Man page
DLDApredictInterface,dlda,MultiAssayExperiment-method Man page
DLDApredictInterface,dlda,matrix-method Man page
DLDAtrainInterface Man page
DLDAtrainInterface,DataFrame-method Man page
DLDAtrainInterface,MultiAssayExperiment-method Man page
DLDAtrainInterface,matrix-method Man page
DMDselection Man page
DMDselection,DataFrame-method Man page
DMDselection,MultiAssayExperiment-method Man page
DMDselection,matrix-method Man page
EasyHardClassifier Man page
EasyHardClassifier,listOrNULL,listOrCharacterOrNULL,character-me Man page
EasyHardClassifier-class Man page
FeatureSetCollection Man page
FeatureSetCollection,list-method Man page
FeatureSetCollection-class Man page
FeatureSetCollectionOrNULL Man page
FeatureSetCollectionOrNULL-class Man page
KolmogorovSmirnovSelection Man page
KolmogorovSmirnovSelection,DataFrame-method Man page
KolmogorovSmirnovSelection,MultiAssayExperiment-method Man page
KolmogorovSmirnovSelection,matrix-method Man page
KullbackLeiblerSelection Man page
KullbackLeiblerSelection,DataFrame-method Man page
KullbackLeiblerSelection,MultiAssayExperiment-method Man page
KullbackLeiblerSelection,matrix-method Man page
MixModelsListsSet Man page
MixModelsListsSet,list-method Man page
MixModelsListsSet-class Man page
NSCpredictInterface Man page
NSCpredictInterface,pamrtrained,DataFrame-method Man page
NSCpredictInterface,pamrtrained,MultiAssayExperiment-method Man page
NSCpredictInterface,pamrtrained,matrix-method Man page
NSCselectionInterface Man page
NSCselectionInterface,DataFrame-method Man page
NSCselectionInterface,MultiAssayExperiment-method Man page
NSCselectionInterface,matrix-method Man page
NSCtrainInterface Man page
NSCtrainInterface,DataFrame-method Man page
NSCtrainInterface,MultiAssayExperiment-method Man page
NSCtrainInterface,matrix-method Man page
PredictParams Man page
PredictParams,ANY-method Man page
PredictParams,functionOrNULL-method Man page
PredictParams-class Man page
ROCplot Man page
ROCplot,list-method Man page
ResubstituteParams Man page
ResubstituteParams,ANY,ANY,ANY-method Man page
ResubstituteParams,numeric,character,character-method Man page
ResubstituteParams-class Man page
SVMpredictInterface Man page
SVMpredictInterface,svm,DataFrame-method Man page
SVMpredictInterface,svm,MultiAssayExperiment-method Man page
SVMpredictInterface,svm,matrix-method Man page
SVMtrainInterface Man page
SVMtrainInterface,DataFrame-method Man page
SVMtrainInterface,MultiAssayExperiment-method Man page
SVMtrainInterface,matrix-method Man page
SelectParams Man page
SelectParams,ANY-method Man page
SelectParams,functionOrList-method Man page
SelectParams-class Man page
SelectResult Man page
SelectResult,character,character,numeric,list,list-method Man page
SelectResult-class Man page
TrainParams Man page
TrainParams,ANY-method Man page
TrainParams,function-method Man page
TrainParams-class Man page
TransformParams Man page
TransformParams,ANY-method Man page
TransformParams,function-method Man page
TransformParams-class Man page
[,FeatureSetCollection,integerOrNumeric,missing,ANY-method Man page
[[,FeatureSetCollection,ANY,missing-method Man page
actualClasses Man page
actualClasses,ClassifyResult-method Man page
bartlettSelection Man page
bartlettSelection,DataFrame-method Man page
bartlettSelection,MultiAssayExperiment-method Man page
bartlettSelection,matrix-method Man page
calcCVperformance Man page
calcCVperformance,ClassifyResult-method Man page
calcExternalPerformance Man page
calcExternalPerformance,factor,factor-method Man page
calcPerformance Man page
characterOrDataFrame Man page
characterOrDataFrame-class Man page
classes Man page
classifyInterface Man page
classifyInterface,DataFrame-method Man page
classifyInterface,MultiAssayExperiment-method Man page
classifyInterface,matrix-method Man page
differentMeansSelection Man page
differentMeansSelection,DataFrame-method Man page
differentMeansSelection,MultiAssayExperiment-method Man page
differentMeansSelection,matrix-method Man page
distribution Man page
distribution,ClassifyResult-method Man page
dlda Man page Source code
dlda-class Man page
easyHardClassifier Man page
easyHardClassifierPredict Man page
easyHardClassifierPredict,EasyHardClassifier,MultiAssayExperimen Man page
easyHardClassifierTrain Man page
easyHardClassifierTrain,MultiAssayExperiment-method Man page
easyHardFeatures Man page
easyHardFeatures,EasyHardClassifier-method Man page
edgeRselection Man page
edgeRselection,DataFrame-method Man page
edgeRselection,MultiAssayExperiment-method Man page
edgeRselection,matrix-method Man page
edgesToHubNetworks Man page Source code
elasticNetFeatures Man page
elasticNetFeatures,multnet-method Man page
elasticNetGLMinterface Man page
elasticNetGLMpredictInterface Man page
elasticNetGLMpredictInterface,multnet,DataFrame-method Man page
elasticNetGLMpredictInterface,multnet,MultiAssayExperiment-metho Man page
elasticNetGLMpredictInterface,multnet,matrix-method Man page
elasticNetGLMtrainInterface Man page
elasticNetGLMtrainInterface,DataFrame-method Man page
elasticNetGLMtrainInterface,MultiAssayExperiment-method Man page
elasticNetGLMtrainInterface,matrix-method Man page
featureNames Man page
featureNames,ClassifyResult-method Man page
featureSetSummary Man page
featureSetSummary,DataFrame-method Man page
featureSetSummary,MultiAssayExperiment-method Man page
featureSetSummary,matrix-method Man page
features Man page
features,ClassifyResult-method Man page
fisherDiscriminant Man page
fisherDiscriminant,DataFrame-method Man page
fisherDiscriminant,MultiAssayExperiment-method Man page
fisherDiscriminant,matrix-method Man page
forestFeatures Man page
forestFeatures,randomForest-method Man page
functionOrList Man page
functionOrList-class Man page
functionOrNULL Man page
functionOrNULL-class Man page
getLocationsAndScales Man page
getLocationsAndScales,DataFrame-method Man page
getLocationsAndScales,MultiAssayExperiment-method Man page
getLocationsAndScales,matrix-method Man page
integerOrNumeric Man page
integerOrNumeric-class Man page
interactorDifferences Man page
interactorDifferences,DataFrame-method Man page
interactorDifferences,MultiAssayExperiment-method Man page
interactorDifferences,matrix-method Man page
kNNinterface Man page
kNNinterface,DataFrame-method Man page
kNNinterface,MultiAssayExperiment-method Man page
kNNinterface,matrix-method Man page
kTSPclassifier Man page
kTSPclassifier,DataFrame-method Man page
kTSPclassifier,MultiAssayExperiment-method Man page
kTSPclassifier,matrix-method Man page
length,FeatureSetCollection-method Man page
leveneSelection Man page
leveneSelection,DataFrame-method Man page
leveneSelection,MultiAssayExperiment-method Man page
leveneSelection,matrix-method Man page
likelihoodRatioSelection Man page
likelihoodRatioSelection,DataFrame-method Man page
likelihoodRatioSelection,MultiAssayExperiment-method Man page
likelihoodRatioSelection,matrix-method Man page
limmaSelection Man page
limmaSelection,DataFrame-method Man page
limmaSelection,MultiAssayExperiment-method Man page
limmaSelection,matrix-method Man page
listOrCharacterOrNULL Man page
listOrCharacterOrNULL-class Man page
listOrNULL Man page
listOrNULL-class Man page
measurements Man page
mixModelsPredict Man page
mixModelsPredict,MixModelsListsSet,DataFrame-method Man page
mixModelsPredict,MixModelsListsSet,MultiAssayExperiment-method Man page
mixModelsPredict,MixModelsListsSet,matrix-method Man page
mixModelsTrain Man page
mixModelsTrain,DataFrame-method Man page
mixModelsTrain,MultiAssayExperiment-method Man page
mixModelsTrain,matrix-method Man page
mixmodels Man page
models Man page
models,ClassifyResult-method Man page
multnet Man page
multnet-class Man page
naiveBayesKernel Man page
naiveBayesKernel,DataFrame-method Man page
naiveBayesKernel,MultiAssayExperiment-method Man page
naiveBayesKernel,matrix-method Man page
networkCorrelationsSelection Man page
networkCorrelationsSelection,DataFrame-method Man page
networkCorrelationsSelection,MultiAssayExperiment-method Man page
networkCorrelationsSelection,matrix-method Man page
pairsDifferencesSelection Man page
pairsDifferencesSelection,DataFrame-method Man page
pairsDifferencesSelection,MultiAssayExperiment-method Man page
pairsDifferencesSelection,matrix-method Man page
pamrtrained Man page
pamrtrained-class Man page
performance Man page
performance,ClassifyResult-method Man page
performancePlot Man page
performancePlot,list-method Man page
plotFeatureClasses Man page
plotFeatureClasses,DataFrame-method Man page
plotFeatureClasses,MultiAssayExperiment-method Man page
plotFeatureClasses,matrix-method Man page
predictions Man page
predictions,ClassifyResult-method Man page
previousSelection Man page
previousSelection,DataFrame-method Man page
previousSelection,MultiAssayExperiment-method Man page
previousSelection,matrix-method Man page
previousTrained Man page
previousTrained,ClassifyResult-method Man page
randomForest Man page
randomForest-class Man page
randomForestInterface Man page
randomForestPredictInterface Man page
randomForestPredictInterface,randomForest,DataFrame-method Man page
randomForestPredictInterface,randomForest,MultiAssayExperiment-m Man page
randomForestPredictInterface,randomForest,matrix-method Man page
randomForestTrainInterface Man page
randomForestTrainInterface,DataFrame-method Man page
randomForestTrainInterface,MultiAssayExperiment-method Man page
randomForestTrainInterface,matrix-method Man page
rankingPlot Man page
rankingPlot,list-method Man page
runTest Man page
runTest,DataFrame-method Man page
runTest,MultiAssayExperiment-method Man page
runTest,matrix-method Man page
runTestEasyHard Man page
runTestEasyHard,MultiAssayExperiment-method Man page
runTests Man page
runTests,DataFrame-method Man page
runTests,MultiAssayExperiment-method Man page
runTests,matrix-method Man page
runTestsEasyHard Man page
runTestsEasyHard,MultiAssayExperiment-method Man page
sampleNames Man page
sampleNames,ClassifyResult-method Man page
samplesMetricMap Man page
samplesMetricMap,list-method Man page
samplesMetricMap,matrix-method Man page
selectionPlot Man page
selectionPlot,list-method Man page
show,ClassifyResult-method Man page
show,EasyHardClassifier-method Man page
show,FeatureSetCollection-method Man page
show,SelectResult-method Man page
subtractFromLocation Man page
subtractFromLocation,DataFrame-method Man page
subtractFromLocation,MultiAssayExperiment-method Man page
subtractFromLocation,matrix-method Man page
svm Man page
svm-class Man page
totalPredictions Man page
totalPredictions,ClassifyResult-method Man page
tunedParameters Man page
tunedParameters,ClassifyResult-method Man page
ClassifyR documentation built on Nov. 8, 2020, 6:53 p.m.

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