API for ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

Global functions
ClassifyResult Man page
ClassifyResult,character,character,character,character,character Man page
ClassifyResult-class Man page
DLDApredictInterface Man page
DLDApredictInterface,dlda,DataFrame-method Man page
DLDApredictInterface,dlda,MultiAssayExperiment-method Man page
DLDApredictInterface,dlda,matrix-method Man page
DLDAtrainInterface Man page
DLDAtrainInterface,DataFrame-method Man page
DLDAtrainInterface,MultiAssayExperiment-method Man page
DLDAtrainInterface,matrix-method Man page
DMDselection Man page
DMDselection,DataFrame-method Man page
DMDselection,MultiAssayExperiment-method Man page
DMDselection,matrix-method Man page
KolmogorovSmirnovSelection Man page
KolmogorovSmirnovSelection,DataFrame-method Man page
KolmogorovSmirnovSelection,MultiAssayExperiment-method Man page
KolmogorovSmirnovSelection,matrix-method Man page
KullbackLeiblerSelection Man page
KullbackLeiblerSelection,DataFrame-method Man page
KullbackLeiblerSelection,MultiAssayExperiment-method Man page
KullbackLeiblerSelection,matrix-method Man page
MAEtoWideTable Source code
NSCpredictInterface Man page
NSCpredictInterface,pamrtrained,DataFrame-method Man page
NSCpredictInterface,pamrtrained,MultiAssayExperiment-method Man page
NSCpredictInterface,pamrtrained,matrix-method Man page
NSCselectionInterface Man page
NSCselectionInterface,DataFrame-method Man page
NSCselectionInterface,MultiAssayExperiment-method Man page
NSCselectionInterface,matrix-method Man page
NSCtrainInterface Man page
NSCtrainInterface,DataFrame-method Man page
NSCtrainInterface,MultiAssayExperiment-method Man page
NSCtrainInterface,matrix-method Man page
PredictParams Man page
PredictParams,ANY-method Man page
PredictParams,functionOrNULL-method Man page
PredictParams-class Man page
ROCplot Man page
ROCplot,list-method Man page
ResubstituteParams Man page
ResubstituteParams,ANY,ANY,ANY-method Man page
ResubstituteParams,numeric,character,character-method Man page
ResubstituteParams-class Man page
SVMpredictInterface Man page
SVMpredictInterface,svm,DataFrame-method Man page
SVMpredictInterface,svm,MultiAssayExperiment-method Man page
SVMpredictInterface,svm,matrix-method Man page
SVMtrainInterface Man page
SVMtrainInterface,DataFrame-method Man page
SVMtrainInterface,MultiAssayExperiment-method Man page
SVMtrainInterface,matrix-method Man page
SelectParams Man page
SelectParams,ANY-method Man page
SelectParams,functionOrList-method Man page
SelectParams-class Man page
SelectResult Man page
SelectResult,character,character,list,list-method Man page
SelectResult-class Man page
TrainParams Man page
TrainParams,ANY-method Man page
TrainParams,function-method Man page
TrainParams-class Man page
TransformParams Man page
TransformParams,ANY-method Man page
TransformParams,function-method Man page
TransformParams-class Man page
actualClasses Man page
actualClasses,ClassifyResult-method Man page
bartlettSelection Man page
bartlettSelection,DataFrame-method Man page
bartlettSelection,MultiAssayExperiment-method Man page
bartlettSelection,matrix-method Man page
binValues Source code
calcCVperformance Man page
calcCVperformance,ClassifyResult-method Man page
calcExternalPerformance Man page
calcExternalPerformance,factor,factor-method Man page
calcPerformance Man page Source code
characterOrDataFrame Man page
characterOrDataFrame-class Man page
checkVariablesAndSame Source code
classes Man page
classifyInterface Man page
classifyInterface,DataFrame-method Man page
classifyInterface,MultiAssayExperiment-method Man page
classifyInterface,matrix-method Man page
densityCrossover Source code
distribution Man page
distribution,ClassifyResult-method Man page
dlda Man page Source code Source code
dlda-class Man page
dmvnorm_diag Source code
doSelection Source code
doTest Source code
doTrain Source code
doTransform Source code
edgeRselection Man page
edgeRselection,DataFrame-method Man page
edgeRselection,MultiAssayExperiment-method Man page
edgeRselection,matrix-method Man page
elasticNetGLMinterface Man page
elasticNetGLMpredictInterface Man page
elasticNetGLMpredictInterface,multnet,DataFrame-method Man page
elasticNetGLMpredictInterface,multnet,MultiAssayExperiment-metho Man page
elasticNetGLMpredictInterface,multnet,matrix-method Man page
elasticNetGLMtrainInterface Man page
elasticNetGLMtrainInterface,DataFrame-method Man page
elasticNetGLMtrainInterface,MultiAssayExperiment-method Man page
elasticNetGLMtrainInterface,matrix-method Man page
featureNames Man page
featureNames,ClassifyResult-method Man page
features Man page
features,ClassifyResult-method Man page
fisherDiscriminant Man page
fisherDiscriminant,DataFrame-method Man page
fisherDiscriminant,MultiAssayExperiment-method Man page
fisherDiscriminant,matrix-method Man page
forestFeatures Man page
forestFeatures,randomForest-method Man page
functionOrList Man page
functionOrList-class Man page
functionOrNULL Man page
functionOrNULL-class Man page
getLocationsAndScales Man page
getLocationsAndScales,DataFrame-method Man page
getLocationsAndScales,MultiAssayExperiment-method Man page
getLocationsAndScales,matrix-method Man page
leveneSelection Man page
leveneSelection,DataFrame-method Man page
leveneSelection,MultiAssayExperiment-method Man page
leveneSelection,matrix-method Man page
likelihoodRatioSelection Man page
likelihoodRatioSelection,DataFrame-method Man page
likelihoodRatioSelection,MultiAssayExperiment-method Man page
likelihoodRatioSelection,matrix-method Man page
limmaSelection Man page
limmaSelection,DataFrame-method Man page
limmaSelection,MultiAssayExperiment-method Man page
limmaSelection,matrix-method Man page
logisticRegressionInterface Man page
logisticRegressionPredictInterface Man page
logisticRegressionPredictInterface,mnlogit,DataFrame-method Man page
logisticRegressionPredictInterface,mnlogit,MultiAssayExperiment- Man page
logisticRegressionPredictInterface,mnlogit,matrix-method Man page
logisticRegressionTrainInterface Man page
logisticRegressionTrainInterface,DataFrame-method Man page
logisticRegressionTrainInterface,MultiAssayExperiment-method Man page
logisticRegressionTrainInterface,matrix-method Man page
measurements Man page
methodFormals Source code
mixModelsPredict Man page
mixModelsPredict,list,DataFrame-method Man page
mixModelsPredict,list,MultiAssayExperiment-method Man page
mixModelsPredict,list,matrix-method Man page
mixModelsTrain Man page
mixModelsTrain,DataFrame-method Man page
mixModelsTrain,MultiAssayExperiment-method Man page
mixModelsTrain,matrix-method Man page
mixmodels Man page
mnlogit Man page
mnlogit-class Man page
multnet Man page
multnet-class Man page
naiveBayesKernel Man page
naiveBayesKernel,DataFrame-method Man page
naiveBayesKernel,MultiAssayExperiment-method Man page
naiveBayesKernel,matrix-method Man page
pamrtrained Man page
pamrtrained-class Man page
performance Man page
performance,ClassifyResult-method Man page
performancePlot Man page
performancePlot,list-method Man page
pickFeatures Source code
plotFeatureClasses Man page
plotFeatureClasses,DataFrame-method Man page
plotFeatureClasses,MultiAssayExperiment-method Man page
plotFeatureClasses,matrix-method Man page
posterior_probs Source code
predict Source code
predictions Man page
predictions,ClassifyResult-method Man page
previousSelection Man page
previousSelection,DataFrame-method Man page
previousSelection,MultiAssayExperiment-method Man page
previousSelection,matrix-method Man page
randomForest Man page
randomForest-class Man page
randomForestInterface Man page
randomForestInterface,DataFrame-method Man page
randomForestInterface,MultiAssayExperiment-method Man page
randomForestInterface,matrix-method Man page
rankingPlot Man page
rankingPlot,list-method Man page
runTest Man page
runTest,DataFrame-method Man page
runTest,MultiAssayExperiment-method Man page
runTest,matrix-method Man page
runTests Man page
runTests,DataFrame-method Man page
runTests,MultiAssayExperiment-method Man page
runTests,matrix-method Man page
sampleNames Man page
sampleNames,ClassifyResult-method Man page
samplesMetricMap Man page
samplesMetricMap,list-method Man page
selectionPlot Man page
selectionPlot,list-method Man page
show,ClassifyResult-method Man page
show,SelectResult-method Man page
splitDataAndClasses Source code
subtractFromLocation Man page
subtractFromLocation,DataFrame-method Man page
subtractFromLocation,MultiAssayExperiment-method Man page
subtractFromLocation,matrix-method Man page
svm Man page
svm-class Man page
totalPredictions Man page
totalPredictions,ClassifyResult-method Man page
tunedParameters Man page
tunedParameters,ClassifyResult-method Man page
validationText Source code
ClassifyR documentation built on Sept. 5, 2018, 6 p.m.