Man pages for ClassifyR
A framework for two-class classification problems, with applications to differential variability and differential distribution testing

bartlettSelectionSelection of Differential Variability with Bartlett Statistic
calcPerformanceAdd Performance Calculations to a ClassifyResult object
classifyInterfaceInterface for PoiClaClu Package's Classify Function
ClassifyResult-classContainer for Storing Classification Results
distributionGet Frequencies of Feature Selection and Sample Errors
DMDselectionSelection of Differential Distributions with Differences in...
edgeRselectionFeature Selection Based on Differential Expression for...
fisherDiscriminantClassification Using Fisher's LDA
functionOrList-classUnion of Functions and List of Functions
getLocationsAndScalesCalculate Location and Scale
KolmogorovSmirnovSelectionSelection of Differential Distributions with...
KullbackLeiblerSelectionSelection of Differential Distributions with Kullback Leibler...
leveneSelectionSelection of Differential Variability with Levene Statistic
likelihoodRatioSelectionSelection of Differential Distributions with Likelihood Ratio...
limmaSelectionSelection of Differentially Expressed Features
medianDifferenceSelectionSelection of Differential Expression by Comparing Differences...
mixmodelsSelection of Differential Distributions with Mixtures of...
naiveBayesKernelClassification Using A Bayes Classifier with Kernel Density...
nearestShrunkenCentroidPredictInterfaceInterface for 'pamr.predict' Function from 'pamr' CRAN...
nearestShrunkenCentroidSelectionInterfaceInterface for 'pamr.listgenes' Function from 'pamr' CRAN...
nearestShrunkenCentroidTrainInterfaceInterface for 'pamr.train' Function from 'pamr' CRAN Package
pamrtrained-classTrained pamr Object
performancePlotPlot Performance Measures for Various Classifications
plotFeatureClassesPlot Density and Scatterplot for Genes By Class
PredictParams-classParameters for Classifier Prediction
previousSelectionAutomated Selection of Previously Selected Features
rankingPlotPlot Pair-wise Overlap of Ranked Features
ResubstituteParams-classParameters for Resubstitution Error Calculation
ROCplotPlot Receiver Operating Curve Graphs for Classification...
runTestPerform a Single Classification
runTestsReproducibly Run Various Kinds of Cross-Validation
samplesMetricMapPlot a Grid of Sample Error Rates or Accuracies
selectionPlotPlot Pair-wise Overlap or Selection Size Distribution of...
SelectParams-classParameters for Feature Selection
SelectResult-classContainer for Storing Feature Selection Results
subtractFromLocationSubtract All Feature Measurements from Location
TrainParams-classParameters for Classifier Training
TransformParams-classParameters for Data Transformation
ClassifyR documentation built on Nov. 17, 2017, 1:42 p.m.