ComplexHeatmap
Make Complex Heatmaps

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547
Source code
62
Man pages
237
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ComplexHeatmap: Make Complex Heatmaps
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API for ComplexHeatmap
Make Complex Heatmaps

Global functions
%v% Man page
+.AdditiveUnit Man page
.is_abs_unit.default Source code
.is_abs_unit.unit Source code
.is_abs_unit.unit.arithmetic Source code
.is_abs_unit.unit.list Source code
.onAttach Source code
.pointsGrob_as_a_list Source code
AdditiveUnit Man page Source code
AdditiveUnit-class Man page
AnnotationFunction Man page Source code
AnnotationFunction-class Man page
ColorMapping Man page Source code
ColorMapping-class Man page
ComplexHeatmap-package Man page
Extract.AnnotationFunction Man page
Extract.Heatmap Man page
Extract.HeatmapAnnotation Man page
Extract.HeatmapList Man page
Extract.SingleAnnotation Man page
Extract.comb_mat Man page
Extract.gridtext Man page
Heatmap Man page Source code
Heatmap-class Man page
HeatmapAnnotation Man page Source code
HeatmapAnnotation-class Man page
HeatmapList Man page Source code
HeatmapList-class Man page
Legend Man page Source code
Legends Man page Source code
Legends-class Man page
R_binary Source code
SingleAnnotation Man page Source code
SingleAnnotation-class Man page
UpSet Man page Source code
[.AnnotationFunction Man page
[.Heatmap Man page
[.HeatmapAnnotation Man page
[.HeatmapList Man page
[.SingleAnnotation Man page
[.comb_mat Man page
[.gridtext Man page
add.AdditiveUnit Man page
add_heatmap Man page
add_heatmap,Heatmap-method Man page
add_heatmap,HeatmapAnnotation-method Man page
add_heatmap,HeatmapList-method Man page
add_horizon_polygon Source code
add_vp_name Source code
adjust_dend_by_x Man page Source code
adjust_heatmap_list Man page
adjust_heatmap_list,HeatmapList-method Man page
alter_graphic Man page Source code
anno_barplot Man page Source code
anno_block Man page Source code
anno_boxplot Man page Source code
anno_density Man page Source code
anno_empty Man page Source code
anno_histogram Man page Source code
anno_horizon Man page Source code
anno_image Man page Source code
anno_joyplot Man page Source code
anno_lines Man page Source code
anno_link Man page Source code
anno_mark Man page Source code
anno_oncoprint_barplot Man page Source code
anno_points Man page Source code
anno_simple Man page Source code
anno_summary Man page Source code
anno_text Man page Source code
anno_type Source code
anno_width_and_height Source code
anno_zoom Man page Source code
annotation_axis_grob Man page Source code
annotation_legend_size Man page
annotation_legend_size,HeatmapList-method Man page
attach_annotation Man page
attach_annotation,Heatmap-method Man page
binaryToInt Source code
box_overlap Source code
c.ColorMapping Man page Source code
c.HeatmapAnnotation Man page Source code
c.list Source code
calc_after_h Source code
calc_after_w Source code
calc_before_h Source code
calc_before_w Source code
calc_ht_h Source code
calc_ht_w Source code
calc_legends_max_height Source code
calc_legends_max_width Source code
can_both_subset Source code
check_gp Source code
cluster_within_group Man page Source code
colorRamp2_biv Source code
color_mapping_legend Man page
color_mapping_legend,ColorMapping-method Man page
columnAnnotation Man page Source code
column_dend Man page
column_dend,Heatmap-method Man page
column_dend,HeatmapList-method Man page
column_order Man page
column_order,Heatmap-method Man page
column_order,HeatmapList-method Man page
comb_degree Man page Source code
comb_name Man page Source code
comb_size Man page Source code
combn Source code
compare_pheatmap Man page Source code
complement_size Man page Source code
component_height Man page
component_height,Heatmap-method Man page
component_height,HeatmapList-method Man page
component_width Man page
component_width,Heatmap-method Man page
component_width,HeatmapList-method Man page
construct_axis_grob Source code
construct_dend_segments Source code
copy_all Man page
copy_all,AnnotationFunction-method Man page
copy_all,SingleAnnotation-method Man page
cut_dendrogram Source code
decorate_annotation Man page Source code
decorate_column_dend Man page Source code
decorate_column_names Man page Source code
decorate_column_title Man page Source code
decorate_dend Man page Source code
decorate_dimnames Man page Source code
decorate_heatmap_body Man page Source code
decorate_row_dend Man page Source code
decorate_row_names Man page Source code
decorate_row_title Man page Source code
decorate_title Man page Source code
default_axis_param Man page Source code
default_col Source code
default_get_type Man page Source code
dend_branches_heights Source code
dend_edit_node Source code
dend_heights Man page Source code
dend_node_apply Source code
dend_xy Man page Source code
dendrogramGrob Man page Source code
densityHeatmap Man page Source code
dev.null Source code
dim.Heatmap Man page Source code
discrete_legend_body Source code
dist2 Man page Source code
draw Man page
draw,AnnotationFunction-method Man page
draw,Heatmap-method Man page
draw,HeatmapAnnotation-method Man page
draw,HeatmapList-method Man page
draw,Legends-method Man page
draw,SingleAnnotation-method Man page
draw_annotation Man page
draw_annotation,Heatmap-method Man page
draw_annotation_legend Man page
draw_annotation_legend,HeatmapList-method Man page
draw_dend Man page
draw_dend,Heatmap-method Man page
draw_dimnames Man page
draw_dimnames,Heatmap-method Man page
draw_heatmap_body Man page
draw_heatmap_body,Heatmap-method Man page
draw_heatmap_legend Man page
draw_heatmap_legend,HeatmapList-method Man page
draw_heatmap_list Man page
draw_heatmap_list,HeatmapList-method Man page
draw_legend Source code
draw_title Man page
draw_title,Heatmap-method Man page
draw_title,HeatmapList-method Man page
edit_vp_in_legend_grob Source code
expand_mode Source code
extract_comb Man page Source code
full_comb_code Man page Source code
generate_param_list_fun Source code
getXY_in_parent_vp Man page Source code
get_annotation_index Source code
get_branches_heights Source code
get_color_mapping_index Source code
get_color_mapping_list Man page
get_color_mapping_list,HeatmapAnnotation-method Man page
get_dend_order Source code
get_dist Source code
get_figure_index Source code
get_heatmap_index Source code
get_legend_param_list Man page
get_legend_param_list,HeatmapAnnotation-method Man page
get_pos_from_brush Source code
get_pos_from_click Source code
get_row_annotation_index Source code
get_text_just Source code
grid.annotation_axis Man page Source code
grid.boxplot Man page Source code
grid.dendrogram Man page Source code
grid.draw.Legends Man page Source code
grid.text Source code
gt_render Man page Source code
guess_align_legend Source code
guess_alter_fun_is_vectorized Source code
has_AnnotationFunction Source code
has_component Source code
has_heatmap Source code
has_heatmap_list_component Source code
has_zoomed_anno_empty Source code
heatmap_layout_index Source code
heatmap_legend_size Man page
heatmap_legend_size,HeatmapList-method Man page
heatmap_list_layout_index Source code
height.AnnotationFunction Man page Source code
height.Heatmap Man page Source code
height.HeatmapAnnotation Man page Source code
height.HeatmapList Man page Source code
height.Legends Man page Source code
height.SingleAnnotation Man page Source code
height<-.AnnotationFunction Man page
height<-.HeatmapAnnotation Man page
height<-.SingleAnnotation Man page
heightAssign.AnnotationFunction Man page
heightAssign.HeatmapAnnotation Man page
heightAssign.SingleAnnotation Man page
heightDetails.Legend Source code
heightDetails.annotation_axis Man page Source code
heightDetails.legend Man page Source code
heightDetails.legend_body Man page Source code
heightDetails.packed_legends Man page Source code
horizon_chart Source code
horizontal_continuous_legend_body Source code
ht_global_opt Man page Source code
ht_opt Man page Source code
ht_pos_on_device Man page Source code
ht_shiny Man page Source code
ht_size Man page Source code
increase_annotation_index Source code
increase_color_mapping_index Source code
increase_figure_index Source code
increase_heatmap_index Source code
increase_row_annotation_index Source code
intToBinary Source code
is_RStudio_current_dev Source code
is_abs_unit Man page Source code
is_abs_unit_v3 Source code
is_abs_unit_v4 Source code
is_diff_equal Source code
is_fun_annotation Source code
is_matrix_annotation Source code
is_simple_annotation Source code
is_windows Source code
ks_dist Source code
ks_dist_1 Source code
ks_dist_pair Source code
length.HeatmapAnnotation Man page Source code
length.HeatmapList Man page Source code
list_components Man page Source code
list_to_matrix Man page Source code
make_cluster Source code
make_column_cluster Man page
make_column_cluster,Heatmap-method Man page
make_comb_mat Man page Source code
make_comb_mat_from_list Source code
make_comb_mat_from_matrix Source code
make_layout Man page
make_layout,Heatmap-method Man page
make_layout,HeatmapList-method Man page
make_row_cluster Man page
make_row_cluster,Heatmap-method Man page
map_to_colors Man page
map_to_colors,ColorMapping-method Man page
max_text_height Man page Source code
max_text_width Man page Source code
merge_dendrogram Man page Source code
names.HeatmapAnnotation Man page Source code
names.HeatmapList Man page Source code
names<-.HeatmapAnnotation Man page
namesAssign.HeatmapAnnotation Man page
ncol.Heatmap Man page Source code
nobs.AnnotationFunction Man page Source code
nobs.HeatmapAnnotation Man page Source code
nobs.SingleAnnotation Man page Source code
normalize_comb_mat Man page Source code
normalize_graphic_param_to_mat Source code
normalize_just Source code
nrow.Heatmap Man page Source code
oncoPrint Man page Source code
order.comb_mat Man page Source code
packLegend Man page Source code
pct_v_pct Man page
pheatmap Man page Source code
pindex Man page Source code
popViewport Source code
prepare Man page
prepare,Heatmap-method Man page
pretty_breaks Source code
print.comb_mat Man page Source code
print.dendrogram Source code
proper_format_lt Source code
random_str Source code
re_size Man page
re_size,HeatmapAnnotation-method Man page
recycle_gp Source code
recycle_list Source code
recycle_param Source code
redraw_ht_vp Source code
rep.list Source code
resize_matrix Source code
restore_matrix Man page Source code
richtext_grob2 Source code
rowAnnotation Man page Source code
row_anno_barplot Man page Source code
row_anno_boxplot Man page Source code
row_anno_density Man page Source code
row_anno_histogram Man page Source code
row_anno_points Man page Source code
row_anno_text Man page Source code
row_dend Man page
row_dend,Heatmap-method Man page
row_dend,HeatmapList-method Man page
row_order Man page
row_order,Heatmap-method Man page
row_order,HeatmapList-method Man page
seek_root_vp Source code
selectArea Man page Source code
selectPosition Man page Source code
set_component_height Man page
set_component_height,Heatmap-method Man page
set_component_width Man page
set_component_width,Heatmap-method Man page
set_name Man page Source code
set_name<- Man page
set_nameAssign Man page
set_size Man page Source code
show Man page
show,AnnotationFunction-method Man page
show,ColorMapping-method Man page
show,Heatmap-method Man page
show,HeatmapAnnotation-method Man page
show,HeatmapList-method Man page
show,SingleAnnotation-method Man page
size.AnnotationFunction Man page Source code
size.HeatmapAnnotation Man page Source code
size.SingleAnnotation Man page Source code
size<-.AnnotationFunction Man page
size<-.HeatmapAnnotation Man page
size<-.SingleAnnotation Man page
sizeAssign.AnnotationFunction Man page
sizeAssign.HeatmapAnnotation Man page
sizeAssign.SingleAnnotation Man page
smartAlign2 Man page Source code
split_by_max Source code
split_vec_by_NA Source code
str.comb_mat Man page Source code
subset_by_comb_ind Source code
subset_by_intersect Source code
subset_by_set_ind Source code
subset_dendrogram Source code
subset_gp Man page Source code
subset_heatmap_by_column Source code
subset_heatmap_by_row Source code
subset_heatmap_list_by_column Source code
subset_heatmap_list_by_row Source code
subset_matrix_by_row Man page Source code
subset_vector Man page Source code
summary.Heatmap Man page Source code
summary.HeatmapList Man page Source code
t.comb_mat Man page Source code
test_alter_fun Man page Source code
textGrob Source code
text_height Source code
text_width Source code
to_unit Source code
to_unit_str Source code
unify_mat_list Man page Source code
unit.c Source code
unit_in_mm Source code
unit_to_numeric Source code
unit_with_vp Source code
upViewport Source code
update_anno_extend Source code
upset_right_annotation Man page Source code
upset_top_annotation Man page Source code
valid_just Source code
validate_axis_param Source code
validate_raster_matrix Source code
vertical_continuous_legend_body Source code
which_first_ht Source code
which_last_ht Source code
which_main_ht Source code
width.AnnotationFunction Man page Source code
width.Heatmap Man page Source code
width.HeatmapAnnotation Man page Source code
width.HeatmapList Man page Source code
width.Legends Man page Source code
width.SingleAnnotation Man page Source code
width<-.AnnotationFunction Man page
width<-.HeatmapAnnotation Man page
width<-.SingleAnnotation Man page
widthAssign.AnnotationFunction Man page
widthAssign.HeatmapAnnotation Man page
widthAssign.SingleAnnotation Man page
widthDetails.Legend Source code
widthDetails.annotation_axis Man page Source code
widthDetails.legend Man page Source code
widthDetails.legend_body Man page Source code
widthDetails.packed_legends Man page Source code
ComplexHeatmap documentation built on Nov. 14, 2020, 2:01 a.m.

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