CoreGx
Classes and Functions to Serve as the Basis for Other 'Gx' Packages

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Source code
55
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CoreGx: Classes and Functions to Serve as the Basis for Other 'Gx' Packages
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API

API for CoreGx
Classes and Functions to Serve as the Basis for Other 'Gx' Packages

Global functions
$,LongTable-method Man page
. Man page
. Source code
.CoreSet Man page
.LongTable Man page
.collapse Source code
.combineTest Source code
.convertCSetMolecularProfilesToSE Man page Source code
.corWeighted Source code
.distancePointLine Man page Source code
.distancePointSegment Man page Source code
.dmedncauchys Source code
.dmednnormals Source code
.edmedncauchys Source code
.edmednnormals Source code
.errorMsg Source code
.examineGOF Source code
.extractIDData Source code
.filterLongDataTable Source code
.fitCurve Source code
.freadNA Source code
.getSupportVec Source code
.intersectList Man page Source code
.joinDropOn Source code
.linInd Source code
.magnitude Source code
.matInd Source code
.mcc Source code
.meshEval Source code
.multinom Source code
.patternSearch Source code
.pmedncauchys Source code
.pmednnormals Source code
.preprocessRegexQuery Source code
.reformatData Source code
.residual Source code
.rmedncauchys Source code
.rmednnormals Source code
.sanitizeInput Source code
.selectDataTable Source code
.stripWhiteSpace Source code
.summarizeMolecularNumbers Source code
.summarizePerturbationNumbers Source code
.summarizeSensitivityNumbers Source code
.symSetDiffList Man page Source code
.unionList Man page Source code
.validateRegexQuery Source code
.variableToCodeString Source code
.warnMsg Source code
CoreSet Man page Source code
CoreSet-class Man page
LongTable Man page Source code
LongTable-class Man page
[,LongTable,ANY,ANY,ANY-method Man page
[[,LongTable,ANY,ANY-method Man page
amcc Man page Source code
annotation,CoreSet-method Man page
annotation<-,CoreSet,list-method Man page
as Man page
as.data.frame.LongTable Man page Source code
as.data.table.LongTable Man page Source code
as.long.table Man page Source code
assay,LongTable,ANY-method Man page
assay<-,LongTable,character-method Man page
assayCols Man page
assayCols,LongTable-method Man page
assayNames,LongTable-method Man page
assays,LongTable-method Man page
assays<-,LongTable,list-method Man page
buildLongTable Man page
buildLongTable,character-method Man page
buildLongTable,data.frame-method Man page
buildLongTable,list-method Man page
callingWaterfall Man page Source code
cellInfo Man page
cellInfo,CoreSet-method Man page
cellInfo<- Man page
cellInfo<-,CoreSet,data.frame-method Man page
cellNames Man page
cellNames,CoreSet-method Man page
cellNames<- Man page
cellNames<-,CoreSet,character-method Man page
checkCsetStructure Man page Source code
clevelandSmall_cSet Man page
colData,LongTable-method Man page
colData<-,LongTable,ANY-method Man page
colIDs Man page
colIDs,LongTable-method Man page
colMeta Man page
colMeta,LongTable-method Man page
colnames,LongTable-method Man page
connectivityScore Man page Source code
cosinePerm Man page Source code
curation Man page
curation,CoreSet-method Man page
curation<- Man page
curation<-,CoreSet,list-method Man page
datasetType Man page
datasetType,CoreSet-method Man page
datasetType<- Man page
datasetType<-,CoreSet-method Man page
dateCreated Man page
dateCreated,CoreSet-method Man page
dateCreated<- Man page
dateCreated<-,CoreSet-method Man page
dim,LongTable-method Man page
dimnames,LongTable-method Man page
drugSensitivitySig Man page
fNames Man page
fNames,CoreSet-method Man page
fNames<- Man page
fNames<-,CoreSet,character,character-method Man page
featureInfo Man page
featureInfo,CoreSet-method Man page
featureInfo<- Man page
featureInfo<-,CoreSet,character,DataFrame-method Man page
featureInfo<-,CoreSet,character,data.frame-method Man page
getIntern Man page
getIntern,LongTable,character-method Man page
gwc Man page Source code
idCols Man page
idCols,LongTable-method Man page
is.items Man page Source code
list_or_LongTable-class Man page
mDataNames Man page
mDataNames,CoreSet-method Man page
mDataNames<- Man page
mDataNames<-,CoreSet-method Man page
mcc Man page Source code
merckLongTable Man page
metadata,LongTable-method Man page
metadata<-,LongTable-method Man page
molecularProfiles Man page
molecularProfiles,CoreSet-method Man page
molecularProfiles<- Man page
molecularProfiles<-,CoreSet,character,character,matrix-method Man page
molecularProfiles<-,CoreSet,character,missing,matrix-method Man page
molecularProfilesSlot Man page
molecularProfilesSlot,CoreSet-method Man page
molecularProfilesSlot<- Man page
molecularProfilesSlot<-,CoreSet,list-method Man page
name Man page
name,CoreSet-method Man page
name<- Man page
name<-,CoreSet-method Man page
pertNumber Man page
pertNumber,CoreSet-method Man page
pertNumber<- Man page
pertNumber<-,CoreSet,array-method Man page
phenoInfo Man page
phenoInfo,CoreSet-method Man page
phenoInfo<- Man page
phenoInfo<-,CoreSet,character,DataFrame-method Man page
phenoInfo<-,CoreSet,character,data.frame-method Man page
reindex Man page
reindex,LongTable-method Man page
rowData,LongTable-method Man page
rowData<-,LongTable-method Man page
rowIDs Man page
rowIDs,LongTable-method Man page
rowMeta Man page
rowMeta,LongTable-method Man page
rownames,LongTable-method Man page
sensNumber Man page
sensNumber,CoreSet-method Man page
sensNumber<- Man page
sensNumber<-,CoreSet,matrix-method Man page
sensitivityInfo Man page
sensitivityInfo,CoreSet-method Man page
sensitivityInfo<- Man page
sensitivityInfo<-,CoreSet,data.frame-method Man page
sensitivityMeasures Man page
sensitivityMeasures,CoreSet-method Man page
sensitivityMeasures<- Man page
sensitivityMeasures<-,CoreSet,character-method Man page
sensitivityProfiles Man page
sensitivityProfiles,CoreSet-method Man page
sensitivityProfiles<- Man page
sensitivityProfiles<-,CoreSet,data.frame-method Man page
sensitivityProfiles<-,CoreSet,matrix-method Man page
sensitivityRaw Man page
sensitivityRaw,CoreSet-method Man page
sensitivityRaw<- Man page
sensitivityRaw<-,CoreSet,array-method Man page
sensitivitySlot Man page
sensitivitySlot,CoreSet-method Man page
sensitivitySlot<- Man page
sensitivitySlot<-,CoreSet,list-method Man page
sensitivitySlotToLongTable Man page
show,CoreSet-method Man page
show,LongTable-method Man page
showSigAnnot Man page
subset,LongTable-method Man page
subsetTo Man page
summarizeMolecularProfiles Man page
summarizeSensitivityProfiles Man page
updateCellId Man page Source code
CoreGx documentation built on Nov. 8, 2020, 4:50 p.m.

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