Files in CoreGx

Classes and Functions to Serve as the Basis for Other 'Gx' Packages

NEWS.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/clevelandSmall_cSet.rda

data/merckLongTable.csv

data/merckLongTable.rda

R/methods-intersect.R R/methods-drugSensitivitySig.R R/methods-sensitivityMeasures.R R/methods-metadata.R R/methods-assayNames.R R/methods-name.R R/methods-subsetTo.R R/methods-assay.R R/methods-cellNames.R R/methods-curation.R R/methods-getIntern.R R/methods-[[.R R/globals.R R/methods-dimnames.R R/methods-[.R R/methods-fNames-methods.R R/methods-sensitivityRaw-methods.R R/methods-coerce.R R/cosinePerm.R R/methods-dateCreated.R R/methods-rowData.R R/connectivityScore.R R/methods-dim.R R/methods-molecularProfiles.R R/methods-phenoInfo.R R/methods-sensNumber.R R/methods-colData.R R/utilities.R R/gwc.R R/class-LongTable.R R/adaptiveMatthewCor.R R/matthewCor.R R/methods-reindex.R R/methods-sensitivitySlot-methods.R R/methods-subset.R R/methods-mDataNames.R R/class-CoreSet.R R/methods-cellInfo.R R/allGenerics.R R/datasets.R R/methods-buildLongTable.R R/methods-sensitivityInfo.R R/methods-pertNumber.R R/methods-$.R R/callingWaterfall.R R/methods-annotation.R R/methods-molecularProfilesSlot.R R/methods-datasetType.R R/methods-featureInfo.R R/methods-assays.R R/methods-sensitivityProfiles.R vignettes/LongTable.Rmd vignettes/coreGx.Rmd

vignettes/LongTableClassDiagram.png

vignettes/LongTableStructure.png

man/cash-LongTable-method.Rd man/curation-set.Rd man/dot-distancePointSegment.Rd man/sensitivityInfo-set.Rd man/buildLongTable.Rd man/datasetType-set.Rd man/subset-LongTable-method.Rd man/reindex-LongTable-method.Rd man/sensitivityProfiles.Rd man/updateCellId.Rd man/drugSensitivitySig.Rd man/dot-convertCSetMolecularProfilesToSE.Rd man/sensNumber-set.Rd man/as.data.frame.LongTable.Rd man/metadata-set-LongTable-method.Rd man/phenoInfo-set.Rd man/dot-intersectList.Rd man/fNames.Rd man/featureInfo-set.Rd man/mcc.Rd man/mDataNames.Rd man/sensitivitySlot-set.Rd man/sensitivitySlotToLongTable.Rd man/dot-unionList.Rd man/molecularProfiles.Rd man/gwc.Rd man/dateCreated-set.Rd man/molecularProfilesSlot.Rd man/assayCols.Rd man/callingWaterfall.Rd man/molecularProfilesSlot-set.Rd man/fNames-set.Rd man/sensitivityRaw-set.Rd man/showSigAnnot.Rd man/checkCsetStructure.Rd man/summarizeSensitivityProfiles.Rd man/sensitivityInfo.Rd man/dateCreated.Rd man/curation.Rd man/metadata-LongTable-method.Rd man/LongTable-class.Rd man/cosinePerm.Rd man/featureInfo.Rd man/cellInfo.Rd man/sub-LongTable-ANY-ANY-ANY-method.Rd man/sensitivityProfiles-set.Rd man/is.items.Rd man/rowMeta.Rd man/CoreSet.Rd man/molecularProfiles-set.Rd man/amcc.Rd man/sensitivitySlot.Rd man/clevelandSmall_cSet.Rd man/sensitivityMeasures-set.Rd man/as.long.table.Rd man/RadioSet.Rd man/dot-.Rd man/pertNumber-set.Rd man/LongTable.Rd man/phenoInfo.Rd man/as.Rd man/merckLongTable.Rd man/summarizeMolecularProfiles.Rd man/show-CoreSet-method.Rd man/as.data.table.LongTable.Rd man/CoreSet-class.Rd man/connectivityScore.Rd man/sensitivityMeasures.Rd man/show-LongTable-method.Rd man/idCols.Rd man/cellInfo-set.Rd man/Create.Rd man/reindex.Rd man/getIntern.Rd man/sensitivityRaw.Rd man/cellNames.Rd man/cellNames-set.Rd man/rowIDs.Rd man/sensNumber.Rd man/list_or_LongTable-class.Rd man/colIDs.Rd man/colMeta.Rd man/subsetTo.Rd man/name.Rd man/mDataNames-set.Rd man/datasetType.Rd man/pertNumber.Rd man/idCols-LongTable-method.Rd man/dot-symSetDiffList.Rd man/dot-distancePointLine.Rd man/name-set.Rd tests/testthat.R

tests/testthat/merckLongTable.rowDataWithKey.rds

tests/testthat/merckLongTable.rds

tests/testthat/merckLongTable.colData.rds

tests/testthat/merckLongTable.assayDimnames.viability.rds

tests/testthat/test_class-LongTable.R

tests/testthat/merckLongTable.csv

tests/testthat/merckLongTable.assayDimnamesMetdata.rds

tests/testthat/merckLongTable.colDataWithKey.rds

tests/testthat/merckLongTable.assays.rds

tests/testthat/merckLongTable.rowData.rds

tests/testthat/merckLongTable.assaysDimnames.rds

tests/testthat/merckLongTable.assay.viability.rds

inst/CITATION

inst/doc/LongTable.Rmd inst/doc/LongTable.R

inst/doc/coreGx.html

inst/doc/coreGx.Rmd inst/doc/coreGx.R

inst/doc/LongTable.html

CoreGx documentation built on Nov. 8, 2020, 4:50 p.m.