API for CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing
| Global functions | |
|---|---|
| .getPath | Source code |
| .onLoad | Source code |
| .parseDivaWorkspace | Source code |
| CytoML-deprecated | Man page |
| CytoML.par.get | Man page |
| CytoML.par.init | Man page Source code |
| CytoML.par.set | Man page |
| GateSetNode | Source code |
| GatingSet2cytobank | Man page Source code |
| GatingSet2flowJo | Man page Source code |
| addAsinhtGml1.5 | Source code |
| addAsinhtGml2 | Source code |
| addBooleanAndGateNode | Source code |
| addBooleanNotGateNode | Source code |
| addBooleanOrGateNode | Source code |
| addCompensation | Source code |
| addCompensationRef | Source code |
| addCustomInfo | Man page Source code |
| addDebugMessage | Source code |
| addDimensionContents | Source code |
| addDimensions | Source code |
| addEllipsoidGateNode | Source code |
| addExperimentInfo | Source code |
| addGate | Source code |
| addGateSets | Source code |
| addGateWithParent | Source code |
| addHyperlogtGml2 | Source code |
| addLintGml2 | Source code |
| addLogicletGml2 | Source code |
| addLogtGml2 | Source code |
| addObjectToGatingML | Source code |
| addPolygonGateNode | Source code |
| addQuadGateNode | Source code |
| addRatioGml1.5 | Source code |
| addRatiotGml2 | Source code |
| addRectGateMinMax | Source code |
| addRectangleGateNode | Source code |
| addReferencedObjectsToEnv | Source code |
| add_version_info | Source code |
| base64decode_cytobank | Source code |
| base64encode_cytobank | Source code |
| ce_get_compensations | Man page Source code |
| ce_get_panels | Man page Source code |
| ce_get_samples | Man page Source code |
| ce_get_transformations | Man page Source code |
| check_binary_status | Source code |
| check_comp | Source code |
| check_docker_status | Source code |
| collectTransform | Source code |
| colnames,cytobank_experiment-method | Man page |
| compensate,GatingSet,graphGML-method | Man page |
| constructTree | Man page Source code |
| createOrUseGml2RatioTransformation | Source code |
| createOrUseGml2Transformation | Source code |
| createTransformIdentifier | Source code |
| customInfoNodeForGate | Source code |
| cytobank2GatingSet | Man page Source code |
| cytobankExperiment | Man page Source code |
| cytobank_experiment-methods | Man page |
| cytobank_to_gatingset | Man page Source code |
| cytobank_to_gatingset.cytobank_experiment | Man page Source code |
| cytobank_to_gatingset.default | Man page Source code |
| decisionHelper | Source code |
| dispatchGatingML2Transform | Source code |
| dispatchTransform | Source code |
| diva_get_bool_gate | Source code |
| diva_get_sample_groups | Man page Source code |
| diva_get_samples | Man page |
| diva_to_gatingset | Man page Source code |
| diva_workspace-class | Man page |
| doubleCheckExistanceOfFilter | Source code |
| doubleCheckExistanceOfParameter | Source code |
| export_comp_trans | Source code |
| export_gates_cytobank | Source code |
| extend | Man page Source code |
| extend.ellipsoidGate | Man page Source code |
| extend.polygonGate | Man page Source code |
| extend.rectangleGate | Man page Source code |
| extend.rectangleGate1d | Source code |
| fasinhTr | Source code |
| filterIdtoXMLId | Source code |
| findParent | Source code |
| fix.ellipsoidGate | Source code |
| fix.rectangleGate | Source code |
| fjSettings | Source code |
| fj_ws_get_keywords | Man page Source code |
| fj_ws_get_sample_groups | Man page Source code |
| fj_ws_get_samples | Man page Source code |
| flinTr | Source code |
| flogTr | Source code |
| flowjo_to_gatingset | Man page Source code |
| flowjo_workspace-class | Man page |
| fratioTr | Source code |
| gating_graphGML | Source code |
| gatingset_to_cytobank | Man page Source code |
| gatingset_to_flowjo | Man page Source code |
| generate_trans | Source code |
| genid | Source code |
| getBounds | Source code |
| getChildren,graphGML,character-method | Man page |
| getCompensationMatrices.graphGML | Man page Source code |
| getCustomNodeInfo | Source code |
| getDetectorList | Source code |
| getElementValueAsNumeric | Source code |
| getFluorochromeList | Source code |
| getGate,graphGML,character-method | Man page |
| getGatingML2RatioParameterList | Source code |
| getKeywords | Man page Source code |
| getNodes,graphGML-method | Man page |
| getObjectId | Source code |
| getParameterList | Source code |
| getParent,graphGML,character-method | Man page |
| getSampleGroups | Man page Source code |
| getSamples | Man page Source code |
| getSide | Source code |
| getTransformationList | Source code |
| getTransformationListForQuadrantGate | Source code |
| getTransformationListGml2 | Source code |
| getTransformations.graphGML | Man page Source code |
| get_global_sheets | Source code |
| get_keywords_by_id | Source code |
| get_keywords_by_name | Source code |
| get_panel_per_file | Source code |
| get_pd | Source code |
| get_sample_groups | Source code |
| get_samples | Source code |
| get_xml_file_path | Source code |
| graphGML-class | Man page |
| gs_compare_cytobank_counts | Man page Source code |
| hyperlogTr | Source code |
| inverse | Source code |
| inverse.ellipsoidGate | Source code |
| inverse.polygon | Source code |
| inverse.polygonGate | Source code |
| inverse.rectangleGate | Source code |
| is.cytof | Source code |
| isIdWrittenToXMLAlready | Source code |
| isNCNameChar | Source code |
| logicleTr | Source code |
| makeCall | Source code |
| markernames,cytobank_experiment-method | Man page |
| matchPath | Man page Source code |
| normalize_gate_path | Source code |
| objectNameToObject | Source code |
| openDiva | Man page Source code |
| open_cytobank_experiment | Man page Source code |
| open_diva_xml | Man page Source code |
| open_flowjo_xml | Man page Source code |
| open_workspace | Source code |
| pData,cytobank_experiment-method | Man page |
| parse.gateInfo | Man page Source code |
| parseWorkspace | Man page |
| parseWorkspace,diva_workspace-method | Man page |
| parseWorkspace,flowjo_workspace-method | Man page |
| parse_workspace | Source code |
| plot,graphGML,missing-method | Man page |
| print.cytobank_experiment | Man page Source code |
| processGate | Source code |
| range.GatingHierarchy | Man page Source code |
| read.gatingML | Source code |
| read.gatingML.cytobank | Man page Source code |
| resolveTransformationReference | Source code |
| sampleNames,cytobank_experiment-method | Man page |
| setLogLevel | Source code |
| set_log_level | Source code |
| shouldTransformationBeSkipped | Source code |
| show,diva_workspace-method | Man page |
| show,flowjo_workspace-method | Man page |
| show,graphGML-method | Man page |
| smartTreeParse | Source code |
| targs | Source code |
| transCompensation | Source code |
| transDg1polynomial | Source code |
| transEH | Source code |
| transExponential | Source code |
| transHyperLog | Source code |
| transHyperbolicSin | Source code |
| transInvSplitScale | Source code |
| transInverseHyperbolicSin | Source code |
| transLogarithm | Source code |
| transQuadratic | Source code |
| transRatio | Source code |
| transSplitScale | Source code |
| transSquareroot | Source code |
| write.gatingML | Source code |
| xmlElementsByTagName | Source code |
| xmlTag | Source code |
